LOC103046226 (znf608)


Basic Information

Item Value
gene id LOC103046226
gene name znf608
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25473885 ~ 25483984 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260802.3
TCTGTCAGAAATCCTATGTGGAGAATGTCAGTCACTTCCTCCGTGCTGGAGCGGAGGAGTGTGAGGCTGAGCGGAGTCGACGCGTCGGACAGCGGGGATGAGTGGGAGATCGGGCTCGGGGATCTGATCATCGACCTGGACGCCGATTTGGATAAGGATCGACGTAGATCGGAAATGCACGGGGGGCGCGCTCTGGCCGTGAAAGGCGCGGAGAGCGGCCAGGGGGAGTCGGAGCGGGAGCGGGAGAGGGAGCGAGAACGCGAGGGTGCGCTGGACGGCCTCGGGGGTCCCGGCGCGCATCCCACCGCCGCCGCCCGAGCCAGTCTCGGCAAGGAGGCGAGGAAATTCAAGGAGAAGCGGAGGCACTCGCTGGGGGACGGGGACGCCGAGCTGTTCGCGTCGGGTGCGGGAAAACGGCGTGAGCCTCAAGGACGCATCGGAGGAGGGGAGCTCACGGGGATGAAcgcggcggcggcagcagcgACGCTGGAGCGCGGCGGCTGCGGCCACCCCGAGCAGCAGCAGCCCGGTGATGTAAGCGGCTCCTGCGCCAAAGGCAAAGAGGGGAAGAGGGGGAGGAATCAGGGCAGGGGGCTGAAGCGGGAGGCGCGGGACTCGGTGCGGGCGAGGAAGGACAGGCACGGCGGCGATGCCGCGGCGTTTGGACTGGGCCCCGTCCCGCAGGACGAGGGCGGCTGGAAGGAGAAACCGTGCTATTGTGGAGACAACGGAGCGGCGGACGCTGGCATGAGGGTTGTTGGCGCTATTGTTGCCGAGCGGGCTGACGGAGCCTGCTCGCCTGAACCGGCTCATAAGACGTTAAGTATAAAAACCAGGTCAGTGGGAACCAATACCCAAGAGGCTGAAAGAGCCATTGAGTCAAACTACATGGAACCATGTCAACCAGGAACAAGCGTAAATTTGGAGGGGATCGTGTGGCATGAAACAGAGGAGGGGGTTCTTGTGGTGAATGTCACATGGAGAAAAAGGACCTATGTGGGAACTCTCTTAGACTGTACCAAGCATGACTGGGCTCCACCTCGGTTTTGTGAGTCCCCAATGAGTGATTCTGAAATGCCATGTGGGAGAGGACGTGGCAAACGAATGCGACTGGCAGTGTCAGACCAGCCTGGCGTAGAACCTGGCCTCTCCAAGATAAGAGGGCTAACACATAAGAGGCGAGGAGTGGGCATAGGCAACAAAGGCAGGCGAGGAAGTCTAAACCTCAGTACCTGTAGGACTCCTGCATACTATTCAGTGGAAGACATCAAATCAAGTCCACTTATATGTggtaaaagaaaaagcaaagcCCCAGCCGATCTAGATTTGAGCCTAGTTTCAGAGGACGTTAggaatggaaatggaaaaagAATGCGTGCCAAATCCAGGAGTGCTCCTTCCACTCCACAGGGCAAATCAGATCCAGCGTTTCTAGACCAGGTCTGCGCCTCTCCGATGCTAATTGATTGCCCACACCCTAACTGCAACAAGAAATACAAGCATATCAATGGGCTACGCTATCACCAATCACACGCACACTTGGACAGCGATAGCAAACAGGAGTTTGAGGCAGAGAGTGAGGACAGGCTATCTGATTACGAGGAATCACTCAGCAATGTGGCCTTTGACTCCactgaaaatctggaaattatTTCCAAGAAGCCAAGAACCATATATAAGCTAAATTCAGGTGGATCTCCAAAGAGCAGAAAGTTATTGCTAAACAGTGATCACAGTCCCACAGCAAGCACTAAACCCCGGAGGAATATGGTAGGCAAGGAGGGACCCGTAGATGACTTGAGCAACCTGCCACTGATTTCAAATATGTCTGTGGTCCTAGAGAACTGCCTCATCACGGACCGTAACTCATCTGTAGAGATGCCTAAGCTTGAAGCCGAAGGTGTCATTGAGAAGAGGgaggttaaaaaagaaaatggaatTGCTGAAAGGTGTTCAGCCAAATCTAGGGCTAACAGACTTATTACTACTCCTGCACCCCCAAAGCTTATTGCCATTCCCACAACTTATCCTACTAAAATCACAGAAAACTCATCTCATCAACCTTCTCCAACTGTTGCTCTCACAAAGGCTAAAAACATATCACTAAAACCGATCAAGCCAAAGTTGGACATTGTTACTCAAGTTAATATGGCGAATGCAACTATAGTTTTGAGTAAAGAAAGTAAGAGAAAGGATAAGCACAGATTAAAGGACAGAAATTGTAAAGATCCAAGAAGTCCAAAAAGTGATCCTGTCTTCACAAAGGCAGAGGAAACAAAATGTATAGGAAAAGACTTTCCAGTCAGCCTGTTGAAAGAGCATTTGAGCAAACAAGACATTGTCAATTGTCCGAATGAAACTCAAGAAAGTCGAATGGCAAGTATCAGAGCTGAGGCTGACAAAGTGTACACCTTTACTGACAACGCTCCCAGCCCTTCCATTGGGAGCACGGCACGAATGGACTCTGGGACGCTGTCAAATGGAGATGGCAATACCACCAAAACAAACAGTCCAGCATACTCTGACATATCTGATGCGGCTGAGGACGGTGGTCTAAATTCAAGATCAAGAAGAAACTCGGCTCCTGACTCCAGTCTGAATGGAAATATTAATGCCAAAATTCCCTGCCAAGTTACCCCCATCACTACAGCCCTGGGTAAAGAAGCTCAGTCGTCAACTCACAGCCACGGATATGAATCTTATGGTCTTCCGGGATACATGCACTCTGGACAAAGCAACTCTGCACCTTTCCTAAAGATCTCCACACCCTACAGTAGAACTAAAGAGGATATCAGAGAGTTAAACGAGGacctgaaaaacacagaatcaaaTGTGGAATCTAACTCTCAGTCACAGCTTCAGTTAGCCATGACCCAAACCCAAACTGCTCTAGCTCAGTCCTTGTACTATGGACAGTACACTCGTAATGTCCCAGTTGACCAGAAGGTCTTAATAGTTCCAAACACCCACCGGCAGCAGAATGATACATGCTGTGATGACGTGCAATACAGTAAACCGAGCAGAGTTCAAGCTAGACGTGGACCTGAGCAGAAAGAGCGAATGAAAGAGGATCCAAAACCGATGATAAATTCATCTGCTACAATCCACAAGGGATCAAACTCTGTTAAAATCAACTGTGCAAAGCCAGGCTTCATCTATGTAGAGCTGGACAAACAGTTATCACTTCAGCAGACGCAAACAAAGTCTTCTCTAATGTCAATGGCCAAAGACCAAGGGCATAACACGGAGTCTGAAGACTTCAACGCAGAAAGTCagaatacaaaaacaaatgtgGACACAAATGTAACATATCTGAATGCTTCAGAATCCCAGTCCTGGAGCCACTCTTTTCAGTCCAAATATGTGAAGCAGCAAAATCAAGAAGTAAACAAGGTCTCTCAGGAAATAGGCCCAGACAAGGTGAAAGAGTGGCGTGGTGTTCCTGAAGCAGATTCCAGACTGGAGGCAGAGCTTCAAAATGTGAAGTGTGAGACACCTCCAGAGGACATCGAAGACAGCCCCAGAGCAGAGATGGAAGAGATACCCAGCGAAAGCTCTGAAGACTCACAGAGTATGAGAGTGGCTTCTTCTCAACAATCCTACATTCAGTACCAGCATTCCTACCCCTACCTCCACTTATGTGAGGCAAACAACACTTCCTTTAGGGTGATGTCACCAGCACTGGTGCACAACTACCCAGGTTTCCATTACCCTCTATACGGGAAGACAGCCGGCCGAGAGGACTCGGAAGGGACACAGAACAGCAAGCCGGTGACTGACCCCACAGCCCTGGAGCTGCTGCCCCATCACAATCTTCCATACCATGGCAAATCTCCTGTGccTGGAGAGCGGGGATCTCCAGATGAGGACAGGGAGAcggaacaagaaagagaaaatgttCCTTTTGCACATCACCTTCACACACATCATCACACTCATCTGGGCATGAGCTACACTCTTGTGTCGGGGCAATATGACCCTTACcaaggagaaaagaaaaactaaaagaacCTCAGCACCAGTTAATGTTTATTAGAAGCATAAAAGCTGGTcattttaaagaacattttaaagtctTTAAGAAAGTCCTTCAGgctcatttttgttttaaccATGAAATCTTTGAAGAAGGACCTGAGAATGGAAGCCTTGGTTGCCAGCCAGCAAGTGGCAACCACACAGACTGCCAGTATATATCACTGGAAATAGCCCCTGTCACTTTATTATGGGATTATTTGTGAATACTGATTATTCATTGTACAATTGCAGAAAATTATACGAAAATGTGAGGCCAAACGACAGGTCCCTGGCTCACACAAGGATTCATAGACATCAATTCCATGGTGTTATTCATTGCCTCCATGGGAGgcagaaactttttttaattaatgaatgtaACATTAGAGGAACAATGCAGTGCTAATATTATGGAACGATGTATAGGTATGTAACAGTATTGCCATAGTGAGACAAGGCTTTGTAAAATAGGCTATTTGCTTATGGGTGCCTGTCACAAGAGACAAACATGTAAAGCTTTCTCTACTAGGATTTCGCCTGTATATGGCTGCATCTAGCTAGTTGTATGCACATGTATCGTTGTGTACCATAATATTGAATGTATTTGATATTTCATGACCTCTATGTGGTAAAGGATGATTTTACAGTAGACTGTAAGGTGGATCTGTCTGCATTAACCTATTAACATGAATATACTGTTATTAGCCACAGCCATTAACCGATTGTATTGTATTAAGTGAAAGGAGTTAATCAACACATCTCAGTGCCATAAAGTATTATCGTAATGTACATTTTGTACATAGTTTAACAAAGCTTAATACTACTAGCTTATGTACAGTTGTTTTCAGTGCAATGTACCGTTGTCTATATCACCTCACATGGCAAAAGTAGTCCCCTTTGTTACTTGAATAGTGCTGCATTTATCTAAATATGTTTACAAGTACATCTTTGGAAAAACAAGTCAGtgttgtattttggtttgtCCTTACTGTCATTAGTTTTTCTTGATGTCAACTATACAGTTCCATGAAATTACAGTTGCTTTTTATACTGTTCTTGCCTTAACACATTTGTCAAtccaaataaaaagtaaaggtTGTTT

Function

symbol description
znf608 Orthologous to human ZNF608 (zinc finger protein 608).

NR:

description
PREDICTED: zinc finger protein 608

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260802.3 True 5119 mRNA 0.47 7 25473885 25483984

Neighbor

gene id symbol gene type direction distance location
cep120 cep120,zgc:163014,LOC107712640 coding downstream 1919 25451112 ~ 25471966 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding downstream 83178 25385690 ~ 25390707 (-)
mtpap NA coding downstream 374781 25071454 ~ 25099104 (-)
zeb1 zeb1 coding downstream 866580 24494315 ~ 24607305 (-)
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 3408882 22056973 ~ 22065003 (-)
LOC103037139 LOC108442001,LOC108265961,LOC107697601,LOC107712558,LOC105890695 coding upstream 2578 25486562 ~ 25505546 (-)
LOC103035606 LOC108441999 coding upstream 26645 25510629 ~ 25520226 (-)
LOC103036837 NA coding upstream 48076 25532060 ~ 25540399 (-)
LOC103035302 NA coding upstream 57322 25541306 ~ 25544527 (-)
lrrc2 lrrc2 coding upstream 128138 25612122 ~ 25621265 (-)
G54358 snx2 non-coding downstream 127188 25333400 ~ 25346697 (-)
G54360 NA non-coding downstream 130472 25341697 ~ 25343413 (-)
LOC111192641 NA non-coding downstream 181911 25099176 ~ 25291974 (-)
G54338 NA non-coding downstream 247682 25225020 ~ 25226203 (-)
G54276 NA non-coding downstream 661258 24810820 ~ 24812627 (-)
G54448 NA non-coding upstream 40120 25524104 ~ 25525169 (-)
trnak-uuu NA non-coding upstream 82290 25566274 ~ 25566346 (-)
trnak-uuu_1 NA non-coding upstream 83157 25567141 ~ 25567213 (-)
trnak-uuu_2 NA non-coding upstream 83409 25567393 ~ 25567465 (-)
trnak-uuu_3 NA non-coding upstream 83661 25567645 ~ 25567717 (-)
jcad NA other downstream 475765 24950612 ~ 24998120 (-)
svil NA other downstream 553295 24786251 ~ 24920590 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 1121949 24341400 ~ 24351936 (-)
G53996 NA other downstream 2381910 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 4654476 20817839 ~ 20819409 (-)
fam240a LOC108441996 other upstream 65366 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 1074422 26558406 ~ 26569939 (-)
ccl28 NA other upstream 1089416 26573400 ~ 26576425 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 1277148 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 1682702 27166686 ~ 27168510 (-)

Expression


Co-expression Network