LOC103032914 (LOC108444319,LOC107657922,LOC107717565,LOC107585851,LOC107750669,LOC107548667)


Basic Information

Item Value
gene id LOC103032914
gene name LOC108444319,LOC107657922,LOC107717565,LOC107585851,LOC107750669,LOC107548667
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 14355158 ~ 14388059 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601720.2
TCACACACGcgcacgcgcgcgcacacacacgcacacccgGGGGCACGAGGCGGGCTGGTCGAGCGCGAGATCATGTGAGAGTCCACGCGCTGAAAGTaggttacagagagagagacacagagagagagagatcgaaGCCgcagaggagaagagagaagtGCGTTGAATTTATTGCAAGCAAGTGCAGCGCGTGCATGCGTGCAAACAAGACAAACtagacaacaacaaaacaaccgCATTAGACTACAGTTCTGAACTTCAGGGACGCGCTTCAGGGAAACTTATGAGGTTTTGCCGCTCCGGTGTAAACGTTTACACCGCTCCGATCCGGAGCCCCGAACACTTCAGTTGGCTCGAGCCGACACGTTCAAATGTTCTGGAGTTGCATAATTATTCaaagataatattaataaccTAGATCCGGCATCAAGATGAGAGcTCAAATCGAGGTGATCCCGTGTAAGATCTGTGGAGATAAGTCATCAGGTATTCACTACGGCGTGATCACATGTGAAGGGTGCAAGGGTTTCTTCCGCCGCAGTCAGCAGAACAATGCCATGTACTCCTGCTCTCGGCAGAGGAACTGCCTGATCGACCGCACCAACCGCAACCGCTGCCAGCACTGCCGCCTGCAGAAATGCCTGGCCCTCGGCATGAGCCGTGATGCTGTGAAATTCGGCCGCATGTCTAAAAAGCAGCGGGACAGCCTCTACGCAGAGGTTCagaagcaccagcagtcccaggaGAGGACCAGCGGCCCCGGGGGCATTACTTTGCCCTCCCGCGTAAACGATGACATCGGAGAGAACGGTAACGGCGGGCACGGCCGGGCGTACAGccgcagcagctccagcacggCCCTCAGCGACCTGGACGACATCGGAGCGCTGCCGGACAGCCTGCTGTTCGACCTGCCGCTGACGCCGGAGGACGCCGGCGAGTACTGCAGCCTGGACCTGCTGGGGGGCAGCGGGGGCAGCAGCTCCTCCTCCCAGAGTTCCCCAGAACAGAGCGTGCAGGAGTTCAGCGATACGCCCCACATCAAACACGAGTACCAGCTCCTCCACGAGACCGgcatgtacacacactcaccgcTCAACGGCCAGCCTGAGGGATGCTCCCTGCTGGAGATAGAGCGCATCACTCAGAGTGTGGTGAAATCCCACGTGGAGACGAGTCAGTACAGTCCTGAGGAGCTAAAACGGCTCACCTGGAACCTCTACACAAGCGAGGAGACCCGCACCTACCAGAACAAGCCGTCAGAGGTGATGTGGCAGCAGTGTGCAGTTCACCTCACCAACGCCATCCAGTACGTGGTGGAGTTCGCCAAGCGCATCACCGGCTTTATGGACCTGTGTCAAAACGACCAGATCATCCTCCTCAAAGCAGGCTGTTTAGACGTGTTGCTGATCCGGATGTGTCGAGCCTATAACCCCCTCAATCACACGCTGCTGTTTGATGGGAAGTTTGCCAGCCCACAGCTCTTCAAAGCACTGGGCTGTGATGACCTGGTGAATGCTGTATATGAACTGGCCAAGACCATGAGCCGTCTGCAGATGACCGAGGAGGAGATGGCCCTCTTCAGCGCCGCTGTGCTCCTGTCTCCAGACCGGCCGTGGCTGAGTGATAGCCAGCGGGTGCAGAGGCTGCAGGAGAAAGTGTACCTGGCTCTGCAGCGCTGCCTCAACAGAGGAGGAACCTCCGAGGAGAAACTGACCAAGATGGTGGCTAAACTGCCCATCATGAAGTCTATCTGTAACCTCCACATCGACAAGCTGGAGTTCTTCCGCCTGCTCCACCCCGAAACGGCGTACAGCTTCCCCCCGCTCTACAGGGAAGTGTTCGGCAGCGAGATCACCTTCCCCGACTCCACCGAGGGCTAGAGCCGGCCCGACGCGGCCCGCAGACtggtgctgagagagagagagagagacaaaaaaagagagagagagacaggactTTAGACAGGAAGCTGTAGGGATGATAAGAGGAAGAGGTGTGGTAGAATTGAGCGTCACAGGCAGACCAGCAGCTCACTGACAATCCTGCACGCATCACTTTAGAACTCCCAGCATCCCTTTCTTTAGGCTCCCTCCCACTTGGGGATACTGGAACCAGTACGAAAGCAGCCCCTCCTAGTTTTTTTAACTTAcgatgatttttatttttttttgtttgctattAAGAAAcagtctaaacacacacacacacacatacacacacacacacacacacagtgctgtgtagtcgagtgtgtatgtgtgtagatgCTACCTACTGAGACAAAGGCAGTGCTCCATTTTTATTGGAGACTGAACCTCTAAAATTGAAGTATTCTAATACAGCGGATTGGGACACAGCCGCCTGTTCTGTACCCTTTAGAGAAGAGACACTTGATGAATGTACCCTAGTGGATATGTGGCACAGCCGCCTCAGGAACGAGACAGAATGTATTAAGTGTGTTtgtcctcattttttttttgtttttttgttgttttgttttcaagCTTTTAAAGCtcgattttacttttttcttttttttttttagcagtttggTGTCACATGATCCCAAACCCAACTGTTTGGAGGGACCAATAGCAAGCAGACTTTATCATAACTGAGTCATTACTGTGTTGTTTTTAGCATTTCAGCATGCTAACTCAGAACTCAGTGTCCCTCATTTTGTAAAGTCAAAGCAAAGTCTGCCAAGTGTTCACTTAGCTGTGGTGTATTCTTAACTGAACAGCAGCTAATGTGCATGCTTTTATACAGGGATGTGTGCAGACGGTGTTtctgagcttttttttatttgtatttgatattatttttaattattaataatttaaaaaacgaaACCTCAGTCCCGCTACCTTTTCCCCTGCAAATGCCACTCtagaatgaaagagaaagtattttaatatttttctgtaattaaatTAGATACTAGAGAGATATATTTAGGGTAATAGAAGTGTTTGAAtaaagattttatatatatatatatataaatatatatatatagatatatatttatatgccgAATTGATCAGACACAAAGGTTAAGATATACAgatagatacagacagacagatagacaggtttagctagatagataagACAGAAAGACAGCATGAAAGGAAAAGCAccataaaaaaagacagaatgaatgaatgaatgttctCAACGCCCTTCAGAaactggctttaaaaaaaaaagcttattggCCGAAACCGGGCCGAGACCGGACCGAACCGAGACCCGAGTCGCTGCCTCAAGAAAGCTCTGGATTTTGAGGCAGGCGGAAAGCACTTACGAACTTCGAGAACTCCCACAAACCCCACAAATCTGGGAACTTAGAACTTGGACCTTCAGAACCAGCTCTTCCTTCAGAACCAGCCTACACCTCACTCAGGATTGCCTCACcagaacacactcacacactcccatTACACTCAAAAACTAACTGGACAATGCTGTGGCCAGCAGCCTCAATCTGAAGTAGAACTGGAACTTTACCCACCACCTACTGAAGTGCTTGAACACTGGGAATGCTGGGAATGGAACAGTATATTTGGATTTACTCGGTTCAAATGTGTGCATCACTCATGTTAGCGCTAGCATTGATTAGCATGACGAGCTGGTAGAGGAAGGGAGGGGTCTAATTACTGTATTCCCGCTTGAACAGCTTAGACTTGGATGAAATTCATGTCTATGTATTGCTGTGTGCAGATAAACTGACACTTAGACTGTTGCGCCACCCAGGCCCCTAGACACTctgaataagaataagaattagaataagaataagatgGGTTATTGAAATTGgaatttt

Function

NR:

description
PREDICTED: nuclear receptor ROR-beta-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601720.2 True 3832 mRNA 0.49 10 14355158 14388059

Neighbor

gene id symbol gene type direction distance location
sh3gl1 sh3gl1,sh3gl1b,LOC107700047,LOC107717567,LOC108265290 coding downstream 6154 14301143 ~ 14349004 (-)
LOC103033235 NA coding downstream 78495 14255068 ~ 14276663 (-)
cpox cpox,LOC102782768 coding downstream 133645 14211590 ~ 14221513 (-)
tmem47 tmem47 coding downstream 168091 14166669 ~ 14187067 (-)
nexn nexn coding downstream 233829 14095333 ~ 14121329 (-)
LOC107197797 NA coding upstream 118675 14506734 ~ 14525266 (-)
LOC103032692 kcnd3,LOC107556323,LOC107669639,LOC107711847 coding upstream 171969 14560028 ~ 14773427 (-)
LOC103046390 LOC108414874,LOC108265648,LOC107679757,LOC107711941,LOC107717540,LOC107591757 coding upstream 722213 15110272 ~ 15128265 (-)
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding upstream 906941 15295000 ~ 15355710 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding upstream 1531411 15919470 ~ 15973008 (-)
G52123 NA non-coding downstream 15878 14306209 ~ 14339280 (-)
G52130 NA non-coding downstream 101730 14251437 ~ 14253428 (-)
G52131 NA non-coding downstream 139296 14205118 ~ 14215862 (-)
G52132 NA non-coding downstream 139596 14202166 ~ 14215562 (-)
G52127 NA non-coding downstream 194207 14159776 ~ 14160951 (-)
G52194 rap1aa,LOC107594522,LOC101074250,LOC107679791,LOC107556321,LOC107751450,LOC107090729,LOC106952760 non-coding upstream 73877 14461936 ~ 14490015 (-)
G52217 NA non-coding upstream 133296 14521355 ~ 14566614 (-)
G52218 NA non-coding upstream 139160 14527219 ~ 14528579 (-)
G52215 NA non-coding upstream 166884 14554943 ~ 14561035 (-)
G52227 NA non-coding upstream 276213 14664272 ~ 14664828 (-)
G51960 glis1 other downstream 691044 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 762211 13565998 ~ 13592947 (-)
smim24 NA other downstream 1031475 13285303 ~ 13323683 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 2473217 11831802 ~ 11881941 (-)
G51346 NA other downstream 3150735 11204054 ~ 11204423 (-)
G52161 NA other upstream 20877 14408936 ~ 14411611 (-)
G52299 NA other upstream 688237 15076296 ~ 15084568 (-)
LOC103028883 LOC108430093 other upstream 1773581 16161640 ~ 16219847 (-)
G52493 NA other upstream 1794676 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 1838177 16226236 ~ 16227174 (-)

Expression


Co-expression Network