LOC107197797


Basic Information

Item Value
gene id LOC107197797
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 14506734 ~ 14525266 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607566.2
ATGAGCAAGAGGACACATCTCATCTTTCAGCTCTGACTCACTGTCTAACCCTCTCACACTGCTGAAACTACAGCCCCTAGCAGGCCCTGCTCAATATCCCACGGCTAAAAGAGCACTAATCAATGGAGCGCTTTAGTTAGAGGctcacctgattggctgaaaggcaGATACactccagagagagaaagagggagagagagagagacagggagtgaaaggaagagacagagagagagggagacagcaAGAGCTCAGCGGAGACTGTGGAAGaTCTCTATGAGGGAAGCAGGCGATGGTCTCCAGGCTCAGATGAACTCTATGATGGGAGCTCTGCAGGAGCTGAAACTCCTCCAGGTCCAGACTGCACTGGAGCAACTGCAGATCTCCTGCAAAACCACTCATCAACCACCAACCACTGACTTCATCCCTCAGCATCCACCTCTCAGAGCTACAACTACAGCTTCAGCTTCAGACACGGTCCTCACAAACCAGCTGCACCACATCGCAGGAACCAGGCAGAAGGATACGCAGGTTTTAGAAGGAAGGTTGGAGGAACATTCGTTTACGAGGGAGTCGAGTCTGTCAGAACCGGAACCGGAAATGGAGCAATCTTTGTTCTTCACCAGCTCTCCAATGGAGAACCATAGGCTGGCACTGGCTCCACACCTGGGTGGAGTAGCAAAGGGGCAAGAACTTCGAGAAGGCCAACATAGAGGAAGTCTTTGCACCACCTCTACTTCCTTCTCTAGCTTTGAGGACGAGAGCTTCTCCTCACGTGATTCTTCACGCGATTCTTCACATGGCTCTTCATGTTATTCTCCTTCAGTTGATGCTGGTTCTTGTTACCCAACTTCGAGTTCCTCCACGCTTGAGGATCATCGACCGCCGTTCCACCCAGCTACAATGGCGGAGCTTCAGGGGCTAATGGACACTCTGTCACGCGAAGGTCCATCAATCGACAGCGACTTTTCGCACTACGATACAGACGACTCCAGCGATTGGACTTCGTCTCTAATGAGCCACAGCCGAAACAGGCAACCCTTGGTGCTTGGCGACAATGTCTTCGCCGATCTCGTAGGCAACTGGCTGGACTTGCCAGAGTTGGAGAGTCGTTTAGCGGACGAAGAAGAACGGGCAGGAAGGCTCGCTGAAGCGTCCGGGCATCCCCTGCGCCTCAGCTGCTCTCAGGAATTCTGCAAACGCCTTTCTTTGACCACCAACATCTTTAAAAAAGTCCTGCGGAGCATTCGACCCGACCGGGACAGGCTGCTCAAGGAGAGACCCGGGTGGTTGACCCCAGAGGACGAGGAGGAGGAACTGTTGAAACGAGGaaagaagaaaatgaaagggTCCAAACCGAAAGGAAGCTTCTATAGACCCTTCTGGACAAAAGCTGGCAGGAGAGCCTGGAAGAACAGAGCCAAACCTCAAGGAGACAACGCGGAGGAGATCAGGAGTTCAAAGGGGCCCGTCTTTGATTACAGCTCTGCGGTGTGGGTTTAAAAGGCACTGattataaacagtgataattacACATTACTCCCAGGACAAAAAACGGAGGGGAACAGAGCGTGTGAAGCAGCGTAGAGACTGAAATCAAGAGACTATTCTCAGGACCAAAGCATTTATAAAAAgaactttttaataaaaaataaatatgaataccATGTCAGGAACATGCTTGCACAATGTATAAAAGAAacattaattgtgtttttttattctctgtatTTCAATctcttatcattattattattattattatcattactatCATTAGCCttgatgttaaaaaaatacattagtcgtctaaaaaaaacagttgcacCCAAAAGAAAGTGTTAGATTGGAATggtaataaaaagaaagataaagattaccagaaacaataaactATTATTAGTCATTTTCAACAATAATGGTTTTATTAGCTGTTATCATGGTCTGTGAGGCCTGTGTGCCATTCGTCTTCATTACAGATGCTGTAACAGCCCAGCTTTACGTTAATTAATTCAATCAatgcaaccagtggccctacctttactgaatgcacattttggtgcactATTCTGTATTCtatactgctgctgtctcaagAGCTTACCTTAAAGACACTAGAAGATACTATATCATGTTCAGCTGCATCAATAGAtctatttctgttttaaaatgtgtggAATGCTGCTATTAACGCTCTATCAACACTCCCTACCACCCCTACCACACAAACTGCAGGAACTGTGAGAGAATGTTGGAGCTGCATGGGATAAattatcacaggactccattaagaacctctacattTCTCTACAGGCTGAGACGTCTGGGTTACACACTgggttacacactacttctatatgtgtagctcaataaatacgAACCAGAGTTTCCCATAtcatgtaaaatgttaaataattcattgtttctggtaggggtgggcgatatggctctaaaataatatca
>XM_022670265.1
TGCGTTTGATTGATGCTGGCTGTTTGAGATCTCAGCCCCTGACGCGGAGTGACTGTTTGAGTTTGGGGCGGAGGGATATCCtgctctctctcagtgctgCGGAGGAGGAGAAGACGCCgggagtcagtcagtcagtcagtcggctagttaggttagctagtcccTCAGACTCACTCCTCCTCCTTATTCCagtagagtgagtgagtgtatcACTGCAGCTGGATTTTAACTGGATTTACTGGTCTTTAATGGGACGCTAACTAACCTAGATAACTAGATAAGCTAGTTAACTTGTTGtcattagctaacgttagctgcCTACAGAGTATTTCTTGTCAGAATGGAGCGTGTGCCTGAGCGGAAGGATATGGACAACGGCTTGAAACGGTTAAAACAGGAACTGaTCTCTATGAGGGAAGCAGGCGATGGTCTCCAGGCTCAGATGAACTCTATGATGGGAGCTCTGCAGGAGCTGAAACTCCTCCAGGTCCAGACTGCACTGGAGCAACTGCAGATCTCCTGCAAAACCACTCATCAACCACCAACCACTGACTTCATCCCTCAGCATCCACCTCTCAGAGCTACAACTACAGCTTCAGCTTCAGACACGGTCCTCACAAACCAGCTGCACCACATCGCAGGAACCAGGCAGAAGGATACGCAGGTTTTAGAAGGAAGGTTGGAGGAACATTCGTTTACGAGGGAGTCGAGTCTGTCAGAACCGGAACCGGAAATGGAGCAATCTTTGTTCTTCACCAGCTCTCCAATGGAGAACCATAGGCTGGCACTGGCTCCACACCTGGGTGGAGTAGCAAAGGGGCAAGAACTTCGAGAAGGCCAACATAGAGGAAGTCTTTGCACCACCTCTACTTCCTTCTCTAGCTTTGAGGACGAGAGCTTCTCCTCACGTGATTCTTCACGCGATTCTTCACATGGCTCTTCATGTTATTCTCCTTCAGTTGATGCTGGTTCTTGTTACCCAACTTCGAGTTCCTCCACGCTTGAGGATCATCGACCGCCGTTCCACCCAGCTACAATGGCGGAGCTTCAGGGGCTAATGGACACTCTGTCACGCGAAGGTCCATCAATCGACAGCGACTTTTCGCACTACGATACAGACGACTCCAGCGATTGGACTTCGTCTCTAATGAGCCACAGCCGAAACAGGCAACCCTTGGTGCTTGGCGACAATGTCTTCGCCGATCTCGTAGGCAACTGGCTGGACTTGCCAGAGTTGGAGAGTCGTTTAGCGGACGAAGAAGAACGGGCAGGAAGGCTCGCTGAAGCGTCCGGGCATCCCCTGCGCCTCAGCTGCTCTCAGGAATTCTGCAAACGCCTTTCTTTGACCACCAACATCTTTAAAAAAGTCCTGCGGAGCATTCGACCCGACCGGGACAGGCTGCTCAAGGAGAGACCCGGGTGGTTGACCCCAGAGGACGAGGAGGAGGAACTGTTGAAACGAGGaaagaagaaaatgaaagggTCCAAACCGAAAGGAAGCTTCTATAGACCCTTCTGGACAAAAGCTGGCAGGAGAGCCTGGAAGAACAGAGCCAAACCTCAAGGAGACAACGCGGAGGAGATCAGGAGTTCAAAGGGGCCCGTCTTTGATTACAGCTCTGCGGTGTGGGTTTAAAAGGCACTGattataaacagtgataattacACATTACTCCCAGGACAAAAAACGGAGGGGAACAGAGCGTGTGAAGCAGCGTAGAGACTGAAATCAAGAGACTATTCTCAGGACCAAAGCATTTATAAAAAgaactttttaataaaaaataaatatgaataccATGTCAGGAACATGCTTGCACAATGTATAAAAGAAacattaattgtgtttttttattctctgtatTTCAATctcttatcattattattattattattatcattactatCATTAGCCttgatgttaaaaaaatacattagtcgtctaaaaaaaacagttgcacCCAAAAGAAAGTGTTAGATTGGAATggtaataaaaagaaagataaagattaccagaaacaataaactATTATTAGTCATTTTCAACAATAATGGTTTTATTAGCTGTTATCATGGTCTGTGAGGCCTGTGTGCCATTCGTCTTCATTACAGATGCTGTAACAGCCCAGCTTTACGTTAATTAATTCAATCAatgcaaccagtggccctacctttactgaatgcacattttggtgcactATTCTGTATTCtatactgctgctgtctcaagAGCTTACCTTAAAGACACTAGAAGATACTATATCATGTTCAGCTGCATCAATAGAtctatttctgttttaaaatgtgtggAATGCTGCTATTAACGCTCTATCAACACTCCCTACCACCCCTACCACACAAACTGCAGGAACTGTGAGAGAATGTTGGAGCTGCATGGGATAAattatcacaggactccattaagaacctctacattTCTCTACAGGCTGAGACGTCTGGGTTACACACTgggttacacactacttctatatgtgtagctcaataaatacgAACCAGAGTTTCCCATAtcatgtaaaatgttaaataattcattgtttctggtaggggtgggcgatatggctctaaaataatatca

Function

GO: NA

KEGG:

id description
ko03020 RNA polymerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607566.2 False 2463 mRNA 0.46 2 14506734 14513494
XM_022670265.1 True 2596 mRNA 0.46 2 14506734 14525266

Neighbor

gene id symbol gene type direction distance location
LOC103032914 LOC108444319,LOC107657922,LOC107717565,LOC107585851,LOC107750669,LOC107548667 coding downstream 118675 14355158 ~ 14388059 (-)
sh3gl1 sh3gl1,sh3gl1b,LOC107700047,LOC107717567,LOC108265290 coding downstream 157730 14301143 ~ 14349004 (-)
LOC103033235 NA coding downstream 230071 14255068 ~ 14276663 (-)
cpox cpox,LOC102782768 coding downstream 285221 14211590 ~ 14221513 (-)
tmem47 tmem47 coding downstream 319667 14166669 ~ 14187067 (-)
LOC103032692 kcnd3,LOC107556323,LOC107669639,LOC107711847 coding upstream 34762 14560028 ~ 14773427 (-)
LOC103046390 LOC108414874,LOC108265648,LOC107679757,LOC107711941,LOC107717540,LOC107591757 coding upstream 585006 15110272 ~ 15128265 (-)
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding upstream 769734 15295000 ~ 15355710 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding upstream 1394204 15919470 ~ 15973008 (-)
LOC103030780 LOC108430129 coding upstream 1455367 15980633 ~ 16035096 (-)
G52194 rap1aa,LOC107594522,LOC101074250,LOC107679791,LOC107556321,LOC107751450,LOC107090729,LOC106952760 non-coding downstream 16719 14461936 ~ 14490015 (-)
G52123 NA non-coding downstream 167454 14306209 ~ 14339280 (-)
G52130 NA non-coding downstream 253306 14251437 ~ 14253428 (-)
G52131 NA non-coding downstream 290872 14205118 ~ 14215862 (-)
G52132 NA non-coding downstream 291172 14202166 ~ 14215562 (-)
G52218 NA non-coding upstream 1953 14527219 ~ 14528579 (-)
G52215 NA non-coding upstream 29677 14554943 ~ 14561035 (-)
G52227 NA non-coding upstream 139006 14664272 ~ 14664828 (-)
G52230 NA non-coding upstream 218287 14743553 ~ 14749494 (-)
G52233 NA non-coding upstream 260145 14785411 ~ 14815750 (-)
G52161 NA other downstream 95123 14408936 ~ 14411611 (-)
G51960 glis1 other downstream 842620 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 913787 13565998 ~ 13592947 (-)
smim24 NA other downstream 1183051 13285303 ~ 13323683 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 2624793 11831802 ~ 11881941 (-)
G52299 NA other upstream 551030 15076296 ~ 15084568 (-)
LOC103028883 LOC108430093 other upstream 1636374 16161640 ~ 16219847 (-)
G52493 NA other upstream 1657469 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 1700970 16226236 ~ 16227174 (-)
LOC111192725 NA other upstream 1818490 16343756 ~ 16356960 (-)

Expression


Co-expression Network