LOC103030471 (nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277)


Basic Information

Item Value
gene id LOC103030471
gene name nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 15919470 ~ 15973008 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670273.1
GGGCGGTGATGTAGCGCTATAATATCAGTGGGCCGGCTCTCAGTAACCCGGCTGTGGTTTGGGCGCTGGGGATCGGTAAAGGCGCAGTCATGGCTGCCTGGATGACCATGCAAGCGGCGCGATGTCCGACAGATGACCTGTCGCTGACTAACTGTGTGGTAGCGAATGAGAGGGATCTAAAGTCTGGCCAaCATGTGATGATCAGGACCACGCCCACTCATAAGTACGTGTTCACTGTAAAGACGCATCAGAGCGTGGTGTCTGGAACCATTGCCTTCAGCCTGCCTCAGAGGAAATGGGCTGGCCTCGCTCTCAACCAAGATGTGCAAGtggctACTTACACGTTCGACACGTCGAGGCAGTACGTGGGAACCATGACTCTGGAGGTCGACTTCCTGCAGAAGAAGAATGCGGACAGTAACCCGTACGACACCGACAAGATGTCCATAGAGTTCATCCAGTTCTTCAACTCACAGGCCTTCTGTGTGGGTCAGCAGTTTGTGTTCAGCTTCTGCGAGAAGCTCTTCTTACTGGTCATTAAAGACGTGGAAGCGATGGACCCCAGCATTCTGAGAGGCGAGCAGAGCTCCAAAAAAAGTAAAATTGACATCGGGTTGTTGCATGGAAACAGTCAGGTGATTTTTGAGAAAGCAGAAAGCTCTACAATCAACCTGATCgGTAAATCTAAGACTCGTGGAGCTCGGCAGTCCATCATTAACCCTGACTGGAATTTCGAGCGGATGGGAATCGGAGGTCTGGATAAAGAGTTCTCCGATATCTTCCGCCGAGCCTTCGCTTCCAGAGTCTTCCCTCCGGATTTAGTGGAGCAGATGGgCGGGAAGCATGTTAAAGGCATCCTGCTGTTCGGTCCTCCTGGCTGCGGGAAGACGCTGATGGCCCGTCAGATTGGGAAGATGCTGAACGCCAGAGAGCCAAAAGTGGTCAACGGTCCTGAGATCCTCAACAAGTATGTGGGAGAGTCAGAGGCCAACATCAGGAAACTGTTTGCTGATGCAGAGGACGAGCagaagaggCTGGGAGTCAATAGCGGACTACACATCATCATTTTTGATGAGATTGATGCCATCTGTAAGCAGAGAGGGAGCATGGCGGGCAGCACTGGGGTTCATGACACCGTGGTGAACCAGTTACTGTCTAAGATTGATGGTGTGGAGCAGCTCAACAACATCCTGGTTATAGgtATGACTAATAGACCAGACCTGATAGATGAAGCTCTCCTGAGGCCTGGAAGACTGGAGGTCAAGATGGAGATTGGTCTGCCGGATGAGTCGGGTCGTGTTCAGATCCTGAATATTCACACAGCCAGGATGAGGCAGTCCAATATGCTGGGCACAGACGTGGACATTAAGGAGCTGGCTGTGGAGACGAAGAACTACAGTGGGGCGGAGCTCGAGGGGCTGGTGCGAGCAGCTCAGTCCACCGCCATGAACCGTCACATCAAGgccaGCACTAAGGTGGAGGTGGACACTGAAAAGGCCCAGGAGCTGCAGGTTAGCAGAAGTGATTTCTGGGCGTCGCTGAATAACGACATCAAACCTGCGTTCGGCACCAATCAGGAAGATTACTCCAGTTATATCCTGAACGGAATAGTGAAGTGGAGTAACGCTGTGACGGATATACTGGAGAACGGAGAGCTGCTGGTGCAGCAGACTAAAAACAGTGAACGCACACCACTGGTAACCGTGTTACTGGAGGGGCCTCCACACTGTGGAAAAACAGCGCTAGCAGCTAAAATCGCAGAGGACTCAGAGTTCCCCTTCATCAAAATCTGCTCTCCAGACAAGATGATCGGCTTCTCTGAGATCGCCAAGTGCCAAGCCATCAAGAAGATTTTTGATGATGCCTACAAGTCCCAGCTGAGCTGCGTGTTGGTGGACGATATTGAACGACTTCTGGACTTTGTTCCCATTGGACCTCGCTTCTCAAACTCAGTTCTTCAAGCTCTACTGGTGCTTCTGAAGAAGACCCCTCCTCGCGGTCGCAAGCTGCTGATTTTGGGCACCACCAGCCGTAAGGACGTGATGCAGGAGATGGGCATGCTGGACTCCTTCAGCACCACCATCCACATCCCCAACATCTCCAGAGGAGAGCATCTGGTGGAGGCCCTGGAGCTGCTGGGAGGTTTCCAGGAAGATGAACGCACACAAATTGCACAGCAAGTCAAAGGCAAAGGAGTGTGGCTCGGCATTAAGAAGCTTCAGATGCTCATCGAAATGTCCCTGCAgatgCTCCCTGAATACAGAGTTAAGAAGTTTTTGGAGCTGCTGACGGAAGAGGGCGCgttGGGTTCTGATAAGCATGTGGCTATATAAACCACATCGCTGGAGCGTGGCCTCACACTGATAGAACTCCATGccATGTTGTGTCCTCTTCTCCGTCCCGTCCAACACTAAAGGAACTCAGCGCAGCGGGGCTGGCTCTGTATATAATCTCCCCTCATGGGAACTGGATGGGTAAATTACACGCATGTGTATGAAGACCTGTAGTGCATATCGATTGATATTAAACATTCCGTCATGTCTTAATAACTCT

Function

symbol description
nsfb Predicted to enable ATP hydrolysis activity. Acts upstream of or within pigment granule maturation and retinal pigment epithelium development. Predicted to be located in cytoplasm. Predicted to be active in Golgi stack. Is expressed in several structures, including nervous system; otic vesicle; pectoral fin; pectoral fin bud; and swim bladder. Used to study oculocutaneous albinism. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy. Orthologous to human NSF (N-ethylmaleimide sensitive factor, vesicle fusing ATPase).

NR:

description
PREDICTED: vesicle-fusing ATPase-like isoform X1

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K06027 NSF, SEC18; vesicle-fusing ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670273.1 True 2553 mRNA 0.52 23 15919470 15973008

Neighbor

gene id symbol gene type direction distance location
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding downstream 563760 15295000 ~ 15355710 (-)
LOC103046390 LOC108414874,LOC108265648,LOC107679757,LOC107711941,LOC107717540,LOC107591757 coding downstream 791205 15110272 ~ 15128265 (-)
LOC103032692 kcnd3,LOC107556323,LOC107669639,LOC107711847 coding downstream 1146043 14560028 ~ 14773427 (-)
LOC107197797 NA coding downstream 1394204 14506734 ~ 14525266 (-)
LOC103032914 LOC108444319,LOC107657922,LOC107717565,LOC107585851,LOC107750669,LOC107548667 coding downstream 1531411 14355158 ~ 14388059 (-)
LOC103030780 LOC108430129 coding upstream 7625 15980633 ~ 16035096 (-)
neurl4 neurl4 coding upstream 113158 16086166 ~ 16129376 (-)
shbg NA coding upstream 167662 16140670 ~ 16159716 (-)
LOC103032046 NA coding upstream 390605 16363613 ~ 16374341 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding upstream 849239 16822247 ~ 16928239 (-)
G52415 NA non-coding downstream 2592 15912055 ~ 15916878 (-)
G52389 NA non-coding downstream 85621 15833575 ~ 15833849 (-)
G52387 NA non-coding downstream 93886 15825328 ~ 15825584 (-)
G52366 NA non-coding downstream 262030 15643846 ~ 15657440 (-)
G52350 NA non-coding downstream 487021 15406985 ~ 15432449 (-)
G52470 NA non-coding upstream 6465 15979473 ~ 15979731 (-)
G52474 NA non-coding upstream 108227 16081235 ~ 16082892 (-)
G52492 NA non-coding upstream 206511 16179519 ~ 16180002 (-)
G52494 NA non-coding upstream 215243 16188251 ~ 16190647 (-)
G52496 NA non-coding upstream 227201 16200209 ~ 16200712 (-)
G52299 NA other downstream 834902 15076296 ~ 15084568 (-)
G52161 NA other downstream 1507859 14408936 ~ 14411611 (-)
G51960 glis1 other downstream 2255356 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 2326523 13565998 ~ 13592947 (-)
smim24 NA other downstream 2595787 13285303 ~ 13323683 (-)
LOC103028883 LOC108430093 other upstream 188632 16161640 ~ 16219847 (-)
G52493 NA other upstream 209727 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 253228 16226236 ~ 16227174 (-)
LOC111192725 NA other upstream 370748 16343756 ~ 16356960 (-)
zcchc4 NA other upstream 433711 16406719 ~ 16427613 (-)

Expression


Co-expression Network