shbg


Basic Information

Item Value
gene id shbg
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16140670 ~ 16159716 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670284.1
AAccacagtatttattcacttcatagagcagcagcagccagaCAGCGTTACTGTGGACCTAAACCTTTAGACTTACAGTTTAATACAGGTTTTATCTGATTAACCAGAGAAGCCCGTTCGTCTGACCGGCCCTGTGTCTGGGTCAACTGACCAAAGATGGACTACCTAAGGAAAGTAGTTGTTTTGTTCTTAATGCTCCAGTATTTTGGTTGGAATACGTTGGCAGGTAAGATATCTGGAGCAGAAGTCATCAACTTTGGCCACAGGCCACCCACCTGGGCACCATTAATGCAGATGAGTGcaaatctgtctgatattacAAGCATCAGGTCCTTCTTTGATTTTCGGACACTTGATCCAGAGGGCATCATATTCTACGGAGACACCAAGGAGGGAAAGGACTGGTTTGTGCTTCTGTTACGTGATGGGATTCCTGAAATGCAGATAGGGAAAGCAAATACACTGGTCAGCGTGCAAGGGGGACCGAAGCTCAATGATGGAGTCTGGTacaatCTGGAGTTACGCAGTGAAGGCACATTTGTGGTTCTGGAAGTGAACAAAAGGCCGGCGCTGGTGGTGGGTGTGGAATCGGATCAGACAGAGGCTGTGCTGACAGGAAAAATACGACTTGCTCTCGGAGGGATGCTGGTGGACAAGAAGAAGCTTTTGCATCAATTCAAACCAGAGCTGGATGCTTGTATAAGGACAGGGAACTGGCTAAACCTCAGCACTCCATGGGACACAGATCCAGACTGGGAGTCTCGGCCTTGTTTCCCTGAGATCAAGAAAGGAAGCTACTTCCCCGGGACAGGAATAGCTGTGTTTAATACAACTGaTCTTCCTGGAGCAGAGACAGAAGAGAAGGGAATTACAATTGAGGTCAATGGATCATGGCAAGGGACATTACTGAGTCTTCAAAGCCCTGGTTTTGAGTTTATTCtgtcagagaaaaaaaacaagGATCTTACCATGGAGCTAAAAGAAGGATCTGAATCTGGCAACACTGCTCTCTCTTCTGAAATCACCAAGCTAACACTGACCATACTGGAGCATTCTCTATTGCTTGATGGTAAATCAGTGCTCAAAGATGAAACTATTGACTTCCTCTCTACGTGGAGAGAGGGGATGCTCTTAGCGTTTGGTGGCGTGCCAGGTGAGGTCAAGGAATCAGAGAGTTCAAATCACCTCCAAGGCTGCCTGGAGAAGATTCTCATTCAGGGACAGGACATCGATCTTGATCAGGCCTCCTTCAAACACTCATCTATTTCATCTCATAGCTGTCCTGCAAAAGCATCTAATCACCTACCTAGATATAAGCATAGCTTGATATGCAATCAGATTAGCATTTTCAGATCTTTGAAAGCAAGATTTAATAtctataatttaaaacaaacagaCTAGTAAGAATGTCCCAAATATCTAAAACTCTATTTTTTACCAACTGAATTTCAGATACCTTTAACTAGACTTTTTCAATAGTAAACTTTAACTATAGTAAAGATTCCATGATAGATTTTATTATCATAATTTGTAACATATgactattttaaaatgacattagGAACAATATGTTTAGTCAGAAAGACTTGACCTGATGTGATAATACTACtagtaaaaattaaattgttGATATCTGCGATTAGAATTTAAGCAGGTGTTTGGGACAAACagtgtaataaaaaatgaatttccaaTGTTTTGCAATTAATCTTGTATGCATTAAACAGCACTAAACTATAATTGAACAACTCATTAGTAGTAGAAGTAAGGCATAATGTATCTTTACTCATGTTTTAATTCTAATGCAGTTTCAGTATGATTTAGGAAAGTCAATGTGTCTATCAGTTGGTATTATCCAAATTAAATTTTGTTACAGGGTCAGTGTAACGTTAGTTTGTCAGTTCAATCTTTTCATTTATGGCTTATTTTTAAAAGAGAATCTTAGGTGTAAAACTTCACTGTTTAATTTTTCCATTTGAGGTAGTAAAGAAGACTTGAGGTTTCATGAATTTTTCCAATTTATCTGAAATTCAGGGAAAATGATCTACCACAAAAGCAAAAGTTtatgttatttaatgttttattggtttcAAAGTAATTGCAATTCACgtgaaaacagcaaaatatcTATCTCAGCaaaccaaaaacatttttgatagCACACAAAGAGAATAAG
>XM_022670285.1
AATGCAGAAccacagtatttattcacttcatagagcagcagcagccagaCAGCGTTACTGTGGACCTAAACCTTTAGACTTACAGTTTAATACAGGTTTTATCTGATTAACCAGAGAAGCCCGTTCGTCTGACCGGCCCTGTGTCTGGGTCAACTGACCAAAGATGGACTACCTAAGGAAAGTAGTTGTTTTGTTCTTAATGCTCCAGTATTTTGGTTGGAATACGTTGGCAGGTAAGATATCTGGAGCAGAAGTCATCAACTTTGGCCACAGGCCACCCACCTGGGCACCATTAATGCAGATGAGTGcaaatctgtctgatattacAAGCATCAGGTCCTTCTTTGATTTTCGGACACTTGATCCAGAGGGCATCATATTCTACGGAGACACCAAGGAGGGAAAGGACTGGTTTGTGCTTCTGTTACGTGATGGGATTCCTGAAATGCAGATAGGGAAAGCAAATACACTGGTCAGCGTGCAAGGGGGACCGAAGCTCAATGATGGAGTCTGGTacaatCTGGAGTTACGCAGTGAAGGCACATTTGTGGTTCTGGAAGTGAACAAAAGGCCGGCGCTGGTGGTGGGTGTGGAATCGGATCAGACAGAGGCTGTGCTGACAGGAAAAATACGACTTGCTCTCGGAGGGATGCTGGTGGACAAGAAGAAGCTTTTGCATCAATTCAAACCAGAGCTGGATGCTTGTATAAGGACAGGGAACTGGCTAAACCTCAGCACTCCATGGGACACAGATCCAGACTGGGAGTCTCGGCCTTGTTTCCCTGAGATCAAGAAAGGAAGCTACTTCCCCGGGACAGGAATAGCTGTGTTTAATACAACTGaTCTTCCTGGAGCAGAGACAGAAGAGAAGGGAATTACAATTGAGGTCAATGGATCATGGCAAGGGACATTACTGAGTCTTCAAAGCCCTGGTTTTGAGTTTATTCtgtcagagaaaaaaaacaagGATCTTACCATGGAGCTAAAAGAAGGATCTGAATCTGGCAACACTGCTCTCTCTTCTGAAATCACCAAGCTAACACTGACCATACTGGAGCATTCTCTATTGCTTGATGGTGAGGTCAAGGAATCAGAGAGTTCAAATCACCTCCAAGGCTGCCTGGAGAAGATTCTCATTCAGGGACAGGACATCGATCTTGATCAGGCCTCCTTCAAACACTCATCTATTTCATCTCATAGCTGTCCTGCAAAAGCATCTAATCACCTACCTAGATATAAGCATAGCTTGATATGCAATCAGATTAGCATTTTCAGATCTTTGAAAGCAAGATTTAATAtctataatttaaaacaaacagaCTAGTAAGAATGTCCCAAATATCTAAAACTCTATTTTTTACCAACTGAATTTCAGATACCTTTAACTAGACTTTTTCAATAGTAAACTTTAACTATAGTAAAGATTCCATGATAGATTTTATTATCATAATTTGTAACATATgactattttaaaatgacattagGAACAATATGTTTAGTCAGAAAGACTTGACCTGATGTGATAATACTACtagtaaaaattaaattgttGATATCTGCGATTAGAATTTAAGCAGGTGTTTGGGACAAACagtgtaataaaaaatgaatttccaaTGTTTTGCAATTAATCTTGTATGCATTAAACAGCACTAAACTATAATTGAACAACTCATTAGTAGTAGAAGTAAGGCATAATGTATCTTTACTCATGTTTTAATTCTAATGCAGTTTCAGTATGATTTAGGAAAGTCAATGTGTCTATCAGTTGGTATTATCCAAATTAAATTTTGTTACAGGGTCAGTGTAACGTTAGTTTGTCAGTTCAATCTTTTCATTTATGGCTTATTTTTAAAAGAGAATCTTAGGTGTAAAACTTCACTGTTTAATTTTTCCATTTGAGGTAGTAAAGAAGACTTGAGGTTTCATGAATTTTTCCAATTTATCTGAAATTCAGGGAAAATGATCTACCACAAAAGCAAAAGTTtatgttatttaatgttttattggtttcAAAGTAATTGCAATTCACgtgaaaacagcaaaatatcTATCTCAGCaaaccaaaaacatttttgatagCACACAAAGAGAATAAG
>XM_022670286.1
AAccacagtatttattcacttcatagagcagcagcagccagaCAGCGTTACTGTGGACCTAAACCTTTAGACTTACAGTTTAATACAGGTTTTATCTGATTAACCAGAGAAGCCCGTTCGTCTGACCGGCCCTGTGTCTGGGTCAACTGACCAAAGATGGACTACCTAAGGAAAGTAGTTGTTTTGTTCTTAATGCTCCAGTATTTTGGTTGGAATACGTTGGCAGGTAAGATATCTGGAGCAGAAGTCATCAACTTTGGCCACAGGCCACCCACCTGGGCACCATTAATGCAGATGAGTGcaaatctgtctgatattacAAGCATCAGGTCCTTCTTTGATTTTCGGACACTTGATCCAGAGGGCATCATATTCTACGGAGACACCAAGGAGGGAAAGGACTGGTTTGTGCTTCTGTTACGTGATGGGATTCCTGAAATGCAGATAGGGAAAGCAAATACACTGGTCAGCGTGCAAGGGGGACCGAAGCTCAATGATGGAGTCTGGTacaatCTGGAGTTACGCAGTGAAGGCACATTTGTGGTTCTGGAAGTGAACAAAAGGCCGGCGCTGGTGGTGGGTGTGGAATCGGATCAGACAGAGGCTGTGCTGACAGGAAAAATACGACTTGCTCTCGGAGGGATGCTGGTGGACAAGAAGAAGCTTTTGCATCAATTCAAACCAGAGCTGGATGCTTGTATAAGGACAGGGAACTGGCTAAACCTCAGCACTCCATGGGACACAGATCCAGACTGGGAGTCTCGGCCTTGTTTCCCTGAGATCAAGAAAGGAAGCTACTTCCCCGGGACAGGAATAGCTGTGTTTAATACAACTGaTCTTCCTGGAGCAGAGACAGAAGAGAAGGGAATTACAATTGAGGTCAATGGATCATGGCAAGGGACATTACTGAGTCTTCAAAGCCCTGGTTTTGAGTTTATTCtgtcagagaaaaaaaacaagGATCTTACCATGGAGCTAAAAGAAGGATCTGAATCTGGCAACACTGCTCTCTCTTCTGAAATCACCAAGCTAACACTGACCATACTGGAGCATTCTCTATTGCTTGATGGTAAATCAGTGCTCAAAGATGAAACTATTGACTTCCTCTCTACGTGGAGAGAGGGGATGCTCTTAGCGTTTGGTGGCGTGCCAGGTGAGGTCAAGGAATCAGAGAGTTCAAATCACCTCCAAGGCTGCCTGGAGAAGATTCTCATTCAGGGACAGGACATCGATCTTGATCAGGCCTCCTTCAAACACTCATCTATTTCATCTCATAGCTGTCCTGCAAAAGCATTGAATGAACTCACTTAAAGCTTGTACACAATCTTTGTTACAACAAGCTCAAATCTTTAATTTGCATCAATGACCATTAAAGTATCAcctgtttaactattttaa

Function

NR:

description
sex hormone-binding globulin precursor

GO:

id name namespace
GO:0005497 androgen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670284.1 True 2176 mRNA 0.39 9 16140670 16159709
XM_022670285.1 False 2099 mRNA 0.39 9 16140670 16159716
XM_022670286.1 False 1398 mRNA 0.45 8 16141692 16159709

Neighbor

gene id symbol gene type direction distance location
neurl4 neurl4 coding downstream 11294 16086166 ~ 16129376 (-)
LOC103030780 LOC108430129 coding downstream 105574 15980633 ~ 16035096 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding downstream 167662 15919470 ~ 15973008 (-)
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding downstream 784960 15295000 ~ 15355710 (-)
LOC103046390 LOC108414874,LOC108265648,LOC107679757,LOC107711941,LOC107717540,LOC107591757 coding downstream 1012405 15110272 ~ 15128265 (-)
LOC103032046 NA coding upstream 203897 16363613 ~ 16374341 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding upstream 662531 16822247 ~ 16928239 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 1030099 17189815 ~ 17464293 (-)
LOC111192622 NA coding upstream 1308335 17468051 ~ 17476591 (-)
LOC103035515 NA coding upstream 1488735 17648451 ~ 17665261 (-)
G52474 NA non-coding downstream 57778 16081235 ~ 16082892 (-)
G52470 NA non-coding downstream 160939 15979473 ~ 15979731 (-)
G52418 NA non-coding downstream 212050 15924236 ~ 15928620 (-)
G52415 NA non-coding downstream 223792 15912055 ~ 15916878 (-)
G52389 NA non-coding downstream 306821 15833575 ~ 15833849 (-)
G52492 NA non-coding upstream 19803 16179519 ~ 16180002 (-)
G52494 NA non-coding upstream 28535 16188251 ~ 16190647 (-)
G52496 NA non-coding upstream 40493 16200209 ~ 16200712 (-)
G52505 NA non-coding upstream 67117 16226833 ~ 16249333 (-)
G52507 polr2a non-coding upstream 76493 16236209 ~ 16238086 (-)
G52299 NA other downstream 1056102 15076296 ~ 15084568 (-)
G52161 NA other downstream 1729059 14408936 ~ 14411611 (-)
G51960 glis1 other downstream 2476556 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 2547723 13565998 ~ 13592947 (-)
smim24 NA other downstream 2816987 13285303 ~ 13323683 (-)
LOC103028883 LOC108430093 other upstream 1924 16161640 ~ 16219847 (-)
G52493 NA other upstream 23019 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 66520 16226236 ~ 16227174 (-)
LOC111192725 NA other upstream 184040 16343756 ~ 16356960 (-)
zcchc4 NA other upstream 247003 16406719 ~ 16427613 (-)

Expression


Co-expression Network