LOC103032046


Basic Information

Item Value
gene id LOC103032046
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16363613 ~ 16374341 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670290.1
CCGCCATCTTTGGCGGGAGGTCGGGAGCCGGAGCGGCGCAGCTGCAGATACGAGGTTTTATAGCGATATATCAGAGCAACAGCGGGTACTACCAGAGCCCTGTCTACTATGTAGAGCTTCTATATGGAGGAAGATATCGTCATGCCATCCAGTTGTTGCGTCATTAACTGCTCCTCCCAGAAGCCCTGCAGAAACCCTGACCAGACTCTCTCCTTCCACAGATTTCCTAAGGATGCTGAGCGAAGGCTGGAGTGGTGTAATGCAGTGCAGATGCAGACGGCAGCTCTGGAGCCGTTCACTCTGTCCTGTAACAGCGTGCTGTGCAGTAAACACTTCACCGAGGACATGTTCGACCGCACTGGCCAGACTGTCCGTCTGAGAGACACTGCCGTACCCTCTGTCTTTAATTTACAAATCACTAAGAAAGTAAAAGATGAAGCTACAAAAGAGATGATTCCACACAAAAGGAGAAACAGTGCACATCtgctgagaagaagaagaaagaagaattGGGAAGGAAGCAATAAAGAGAGAATACAAAGCACAGCCTCAGGTCTGGGAGAGTTGGCTCTGGCGGCTGAGCTGATGGAGGAGAGCCAGCAGGAGATTCAGAAAGGATTCCAGAACGACCACGGTGGCCTTCCCCTCCCGTCCGACCCGGCGAGACTGAGCGGTCTGGTGCGAAACCTGGCGAAAGAGAGACACTGGCAGGGGGAGACGCTGCTCTCGCTCCGCAAAGAGCTCAAAACCAAGGACGCTCAGCTGCAGGAGAAGAAGCTGCAGTTGGAGAGGATGGTGGAGAGTCAGAGAGATGCTGATAAGTATAAAATCTGCTCTCTGGAGAACATGTTATGTAAGCAGCGCCTGGAGACGCTGAAAGTACAGGAGGAACTGTCCCAAACCAGGAAGCAGCTGAAGGAACGTACAGAGGCCCTGCACTGCCTGGCTGCTGTCAGACAGgtcacTCCATCCTCTCGTGCGAGCATGTTCACTGTGAAGGCCCTGTGCCGTGGTTCGGTGAAGTGGCTCCATTTCTACACTGGTTTTAAATCGTACGCTCGTTTCCGGGCTCTGCTGGCCTTCCTGCAGGGCTCCGATGGATCCGTCCTGCACTGGAATGatcgggaggaggaggaggaaaagagcAGGGAGGATGAAGGGATGAGTGAGAAGATGGAGAAGAATCCAAGTTCAGACCAAACTTCAACGGAAGAGTCGAGGCTTCAGGTATCAGAGGATGatgctacagcagcagcaggacctGATTCTGGAGGCTGGAGGTGGGAGGAGACAGCGGAGACGGTGAGGCTGAGGCTGATTGGTTCTCAGCGGGGTGAGGAGAGCAGACGCTACGCCCTCAGCCCGGAGGAccagctgctgctggtgctgacccGCCTCCGCCTGGGCCTCCTCACCTCAGACCTGTCCTTCCGCTTCCAAATAGCAGAGGCCACCGTCTCCCGCATGTGGGTGCAGTGGGTGGAGCTCCTGCGGAAGAAGCTGCAGCAGatcccGGTGCGCTGCAGTCCTCATTACGTCTCCGTATTTCAGCCTAAACACACTCTGTCCTGTGTTTCGGGTCGTCAGCTGACCATCCTGCACTGCGTGGACCTCTTCTGTAGCTCCTCAAAACGGGACCGGCAGCAGGCGGCCAGAAGACTACGCCCCTCCTCAGACGGGCAGCACCTATCAGCTCTGCCGTATCGATTTCCCTGCCCGGTCCGTGTCTGCGCCGTGGCCTCGCCGGAGGGCTACCTGGGCTTCTGCAGCTCCGCCCGCCTGGACGAGTGGCAGGAGTGGACAGCCAATCAGGATAACCCAAAGCCTTTAACCTTACCTGCGTTTGTAATGAATGGGGAGGGGGCGGAGCCTCTCGCTGGTATGCCAGTAAGGGAAGTGCTGAGTATTAAGAGTCTGACGGACAAAGTGATGAAATATCATTATCTGAGGACGGTTCATGCACACGGGTCAGAGGCTCTGCTGGACCAGGCCTGGGAGGTGTGCTGCTACCTGGCCTGCCTACTGTATCAGCCAATGGGGCTGCGCTAACTGCAGGTCACTGGCCAATAGGGCTCCAAGATACTGGAAAAATAATTTTTGGCTCTGCAACGTATATTGCTGTTAGTGTTGTTGTCAAGACCACTAGACCTgattcaagaccaagacttgtAGGTatttgagtccaagtcaagaccaaaagTTTTGGTAGTTAAATCTGAGTCCAAGACCAAGACTTCTAGTtgttgagtccaagtcaagaccaagacttttggTAGTTGAATCCAAGTGAAGACCAAGACTTTTGGTTGTTgaatccaagtcaagaccaagacttttggTTGTTgaatccaagtcaagaccaagacttttggTTGTTGAGACCAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670290.1 True 2387 mRNA 0.54 9 16363613 16374341

Neighbor

gene id symbol gene type direction distance location
shbg NA coding downstream 203897 16140670 ~ 16159716 (-)
neurl4 neurl4 coding downstream 234237 16086166 ~ 16129376 (-)
LOC103030780 LOC108430129 coding downstream 328517 15980633 ~ 16035096 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding downstream 390605 15919470 ~ 15973008 (-)
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding downstream 1007903 15295000 ~ 15355710 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding upstream 447906 16822247 ~ 16928239 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 815474 17189815 ~ 17464293 (-)
LOC111192622 NA coding upstream 1093710 17468051 ~ 17476591 (-)
LOC103035515 NA coding upstream 1274110 17648451 ~ 17665261 (-)
LOC103035822 NA coding upstream 1294323 17668664 ~ 17669725 (-)
G52538 NA non-coding downstream 23646 16292416 ~ 16339967 (-)
G52547 NA non-coding downstream 63912 16296010 ~ 16299701 (-)
G52540 LOC107584402,LOC108430072,LOC107733451,LOC107657288,LOC107738984,LOC107556576 non-coding downstream 70541 16285052 ~ 16293072 (-)
G52543 NA non-coding downstream 74068 16261118 ~ 16289545 (-)
G52542 NA non-coding downstream 108135 16255142 ~ 16255478 (-)
G52559 NA non-coding upstream 806 16375147 ~ 16376685 (-)
G52560 NA non-coding upstream 2658 16376999 ~ 16378858 (-)
G52565 mfsd8 non-coding upstream 23857 16398198 ~ 16402965 (-)
G52654 NA non-coding upstream 220830 16595171 ~ 16651572 (-)
G52655 NA non-coding upstream 248408 16622749 ~ 16677399 (-)
LOC111192725 NA other downstream 6653 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 136439 16226236 ~ 16227174 (-)
LOC103028883 LOC108430093 other downstream 143766 16161640 ~ 16219847 (-)
G52493 NA other downstream 178301 16182735 ~ 16185312 (-)
G52299 NA other downstream 1279045 15076296 ~ 15084568 (-)
zcchc4 NA other upstream 32378 16406719 ~ 16427613 (-)
G52652 NA other upstream 213809 16588150 ~ 16589783 (-)
G53164 NA other upstream 2212060 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 3148361 19522702 ~ 19570378 (-)
G53382 NA other upstream 3475609 19849950 ~ 19850350 (-)

Expression


Co-expression Network