zcchc4


Basic Information

Item Value
gene id zcchc4
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16406719 ~ 16427613 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670292.1
CGTAGAGCGCGTGTAATGTTTGCGCGACAAACCAGCACAGCATGGCCCAGATTATACTGGGTTTATTCTGAGTTTTTACTGCGTTTAGACTGGATTTATACTGGGTTTAGAAGGAGATTCTGGATCAGAATTaaccccagcagcagcagagctggaTAATGGTGAACACGGAGGATTTAGGAGATATCGAAGCTGTTATTCAAGATGAAGAGGATATAAAAGCTCCACAGTGTCCGCACGGACCTGCTGTGCTGTTTGAGGTGCAGTGTGAAGGAGAGAAGAAGGGAAGGAGGTTTTACGCTTGTTCTGCATGTCGTGATCGAAAGGACTGCAACTTTTTTCAGTGGGAGAATGAAAAGGTATCGGAGGCAAGGCTGCTAGCGAGAGAACAACAGAACCGATCAAAGTTGCCTCCCTTCACTCATGAACAATACTGCACAAGGTTCAGAGAGTTTGCGAGTCTCCCGCTGGATCAAAAGAGGTTTTGTGTGGAATGTCAGATCCTGCTGCTTCCTGTGGAGTGGGAGGGTCACGCCTCTCACCGGGTCCTCTCAGACATCACCGTGTCTCAGCTGAGGAGACCCAGTCTGCTGCTGAGTCCTCTGGAGAATAAGAAGAGTAATGCTCAGTACCTGTTCGCTGAGCGCAGCTGCCGCTTCCTGCTGAAGGTGCTGTCTGGACTGGGCTTCCGGAAGTTTCTGTGTGTGGGGACGCCGCGATTACATGAACTGATCAAGGTGCAAAGCTCAGAGAACAAGAGTAGTGACCCCATGAAGAGTTTACTGTTGGACATCGACTTCagATATTCTCAGTTTTATGGGCAGGACGAATTCTGTCATTATAACATGTTTAACCATCACTTCTTTAATGGAGAGgAAGCATCCAGAGTGTTCctggacttcctgactgaggACAGATCTAAAGTGGTGATGGTGGCGGATCCACCGTTCGGGGGGCTGGTGAAGCTGCTGGGTCACACCTTCTCAAAGATATCAGAAACATGGAGAAAGCAGCAGGAACCAGGGCTGGGCGTGTCTGAGATGCCGATGGTGTGGATTTTTCCGTACTTCTTTGAGCTGCGGATTCTCGAATGTTTCCCTTCTTTTGCTATGCTGGATTATCagGTAGATTATGACAACCACCCTTTGTATAAGCATGGGAAGTCTGGCAGGAAACAATCACCTGTCCGACTCTTCACAAACCTCTGTCCCAAAGACATTGTTCTACCAAAGGAGGAAGGCTACAGATTTTGCGCTATTTGTGAGAGATACGTTTCAGCAGAGAATAAACACTGCTCTGTGTGTAACGCCTGCACATCAAAGAATGGAACAGAATGGAAGCATTGTTCACAATGTGACAAATGTGTGAAGTCCTCCTGGAGCCATTGTTCTTCGTGTGGTTATTGTGTTCTGCCGAATCACCAGTGTGGGCAGACGGGCTGTTTCAACTGTGGCGACCGTGGGCACAAGCTCAGAGCCTGTCCAAAGAAAGGCAAGAAAAActtacagcagcagcagcagaagaagaaaaagaagaagagtaaGAGTGGTAAAGCAGCTCCAGGAACGTTAAACAAGAGCGGCAACAAAACCACAGGCAAACACAAGAGAGGCAAACACTCACGCGGGAAGAAGTAACCGGTCACGTGATTCCTCTCTCACGCAGCGCTGCAGAGGTGTGACACTGTGCTGGTGAGGGTGAGGCTGAAACTCGAGTCATTTATCCTGGATCTGCTGGAGTTCTGCAGCTTTAGCAGGACTGAAACATCAAACTTCTGTAGTGAAGTTCCAGTAAAGTATTGAGAAAACTGACTGGTTATGTTGAATTATTGAAATTCTCTGTAAAAAACATTTCGGAAACACTTTGTATAAATCTCATGTCTATTAGAAtctataaacacaaacaaacatattcataatacattataatgcttttataaggcattatagatatagctatacatatttataaaagtgtataacacattatatgCATGTTTATTATGCTGTGTGAATTGAGActataatgcatcataagctATGCTTGTAATAGGTTACAGATAtggcttaaaatatatatttccatgagggtgccgagtggtccagcaggctaatgTCTGCCACATGCACATGCAGCAagtcatcagctgccggagccccgagagagcacagttggccttgctctgtgTTCATAAGTAGGCTTTGTTGAGGTTCTTGGTATTAACATATCAtcttataagcacagcttatgatGCATTAGAATTACAATTCATAGTTGTAGAATAATACacatggctatatatatatatatttttctaaaagtgtataacacattatatgCATGTTTATTATGCTGTGTGAATTGAGActataatgcatcataagctATGCTTGTAATAGGTTACAGATAtggcttaaaatatatatttccatgagggtgccgagtggtccagcaggctaatgTCTGCCACATGCACATGCAGCAagtcatcagctgccggagccccgagagagcacagttggccttgctctgtgTTCATAAGTAGGCTTTGTTGAGGTTCTTGGTATTAACATATCAtcttataagcacagcttatgatGCATTAGAATTACAATTCATAGTTGTAGAATAATACacatggctatatatatatatatttttctaaaagtgtataacacattatagcaatATTTATTATGCCTTACGCATACATCACAATGAgttataagtatgtttatagagacatttataaacatgaCTAATAGAAGGTGTTACtgccatttttaaaaacataactgATTTTgttcattcttttgttttttgtgttttaagtgcagaaataaaaatctgatCAACTGATTTATGTGATTTGTTGAATCATCTGTATTAAAGCAGTTGAGCATGAGTGTGTTTAACAGCACAGCTTTAAAGTTATTTACAAAAACACATCATCTCAAGTGTTACAGAAATGacaaacatttatgtttttaaaattaaaccattaaataaaaaaattaaaccagcattaaacatttcttaatcaatttttttgttgttaaaagtaaaaagttaacACTTCATTATGGGTTCATTTACACATACCTTGTATTGTTCTCAAACaatccaggaaaacactgcatctTAAAGTAATGAAGCATCACACacctgaaagaattctgcatggaggaatgGGAAACACTTTCTCCCAGCCTAAATATCTTaagaactggtgttgtgctgaaatccatCTTCCCTTGCTGTGTATTTGCGTCACgcagcagtacgggtacaacagattacggtgctggtgattctgtatctactgtaactgtagattaattacagagca
>XR_002650036.1
CGTAGAGCGCGTGTAATGTTTGCGCGACAAACCAGCACAGCATGGCCCAGATTATACTGGGTTTATTCTGAGTTTTTACTGCGTTTAGACTGGATTTATACTGGGTTTAGAAGGAGATTCTGGATCAGAATTaaccccagcagcagcagagctggaTAATGGTGAACACGGAGGATTTAGGAGATATCGAAGCTGTTATTCAAGATGAAGAGGATATAAAAGCTCCACAGTGTCCGCACGGACCTGCTGTGCTGTTTGAGGTGCAGTGTGAAGGAGAGAAGAAGGGAAGGAGGTTTTACGCTTGTTCTGCATGTCGTGATCGAAAGGACTGCAACTTTTTTCAGTGGGAGAATGAAAAGGTATCGGAGGCAAGGCTGCTAGCGAGAGAACAACAGAACCGATCAAAGTTGCCTCCCTTCACTCATGAACAATACTGCACAAGGTTCAGAGAGTTTGCGAGTCTCCCGCTGGATCAAAAGAGGTTTTGTGTGGAATGTCAGATCCTGCTGCTTCCTGTGGAGTGGGAGGGTCACGCCTCTCACCGGGTCCTCTCAGACATCACCGTGTCTCAGCTGAGGAGACCCAGTCTGCTGCTGAGTCCTCTGGAGAATAAGAAGAGTAATGCTCAGTACCTGTTCGCTGAGCGCAGCTGCCGCTTCCTGCTGAAGGTGCTGTCTGGACTGGGCTTCCGGAAGTTTCTGTGTGTGGGGACGCCGCGATTACATGAACTGATCAAGGTGCAAAGCTCAGAGAACAAGAGTAGTGACCCCATGAAGAGTTTACTGTTGGACATCGACTTCagATATTCTCAGTTTTATGGGCAGGACGAATTCTGTCATTATAACATGTTTAACCATCACTTCTTTAATGGAGAGgAAGCATCCAGAGTGTTCctggacttcctgactgaggACAGATCTAAAGTGGTGATGGTGGCGGATCCACCGTTCGGGGGGCTGGTGAAGCTGCTGGGTCACACCTTCTCAAAGATATCAGAAACATGGAGAAAGCAGCAGGAACCAGGGCTGGGCGTGTCTGAGATGCCGATGGTGTGGATTTTTCCGTACTTCTTTGAGCTGCGGATTCTCGAATGTTTCCCTTCTTTTGCTATGCTGGATTATCagGTAGATTATGACAACCACCCTTTGTATAAGCATGGGAAGTCTGGCAGGAAACAATCACCTGTCCGACTCTTCACAAACCTCTGTCCCAAAGACATTGTTCTACCAAAGGAGGAAGGCTACAGATTTTGCGCTATTTGTGAGAGATACGTTTCAGCAGAGAATAAACACTGCTCTGTGTGTAACGCCTGCACATCAAAGAATGGAACAGAATGGAAGCATTGTTCACAATGTGACAAATGTGTGAAGTCCTCCTGGAGCCATTGTTCTTCGTGTGGTTATTGTGTTCTGCCGAATCACCAGTGTGGGCAGACGGGCTGTTTCAACTGTGGCGACCGTGGGCACAAGCTCAGAGCCTGTCCAAAGAAAGGCAAGAAAAActtacagcagcagcagcagaagaagaaaaagaagaagagtaaGAGTGGTAAAGCAGCTCCAGGAACGTTAAACAAGAGCGGCAACAAAACCACAGGCAAACACAAGAGAGGCAAACACTCACGCGGGAAGAAGTAACCGGTCACGTGATTCCTCTCTCACGCAGCGCTGCAGAGGTGTGACACTGTGCTGGAGTTCTGCAGCTTTAGCAGGACTGAAACATCAAACTTCTGTAGTGAAGTTCCAGTAAAGTATTGAGAAAACTGACTGGTTATGTTGAATTATTGAAATTCTCTGTAAAAAACATTTCGGAAACACTTTGTATAAATCTCATGTCTATTAGAAtctataaacacaaacaaacatattcataatacattataatgcttttataaggcattatagatatagctatacatatttataaaagtgtataacacattatatgCATGTTTATTATGCTGTGTGAATTGAGActataatgcatcataagctATGCTTGTAATAGGTTACAGATAtggcttaaaatatatatttccatgagggtgccgagtggtccagcaggctaatgTCTGCCACATGCACATGCAGCAagtcatcagctgccggagccccgagagagcacagttggccttgctctgtgTTCATAAGTAGGCTTTGTTGAGGTTCTTGGTATTAACATATCAtcttataagcacagcttatgatGCATTAGAATTACAATTCATAGTTGTAGAATAATACacatggctatatatatatatatttttctaaaagtgtataacacattatatgCATGTTTATTATGCTGTGTGAATTGAGActataatgcatcataagctATGCTTGTAATAGGTTACAGATAtggcttaaaatatatatttccatgagggtgccgagtggtccagcaggctaatgTCTGCCACATGCACATGCAGCAagtcatcagctgccggagccccgagagagcacagttggccttgctctgtgTTCATAAGTAGGCTTTGTTGAGGTTCTTGGTATTAACATATCAtcttataagcacagcttatgatGCATTAGAATTACAATTCATAGTTGTAGAATAATACacatggctatatatatatatatttttctaaaagtgtataacacattatagcaatATTTATTATGCCTTACGCATACATCACAATGAgttataagtatgtttatagagacatttataaacatgaCTAATAGAAGGTGTTACtgccatttttaaaaacataactgATTTTgttcattcttttgttttttgtgttttaagtgcagaaataaaaatctgatCAACTGATTTATGTGATTTGTTGAATCATCTGTATTAAAGCAGTTGAGCATGAGTGTGTTTAACAGCACAGCTTTAAAGTTATTTACAAAAACACATCATCTCAAGTGTTACAGAAATGacaaacatttatgtttttaaaattaaaccattaaataaaaaaattaaaccagcattaaacatttcttaatcaatttttttgttgttaaaagtaaaaagttaacACTTCATTATGGGTTCATTTACACATACCTTGTATTGTTCTCAAACaatccaggaaaacactgcatctTAAAGTAATGAAGCATCACACacctgaaagaattctgcatggaggaatgGGAAACACTTTCTCCCAGCCTAAATATCTTaagaactggtgttgtgctgaaatccatCTTCCCTTGCTGTGTATTTGCGTCACgcagcagtacgggtacaacagattacggtgctggtgattctgtatctactgtaactgtagattaattacagagca

Function

NR:

description
PREDICTED: zinc finger CCHC domain-containing protein 4-like

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K25177 ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670292.1 True 3349 mRNA 0.41 13 16406719 16427613
XR_002650036.1 False 3304 misc_RNA 0.41 14 16406719 16427613

Neighbor

gene id symbol gene type direction distance location
LOC103032046 NA coding downstream 32378 16363613 ~ 16374341 (-)
shbg NA coding downstream 247003 16140670 ~ 16159716 (-)
neurl4 neurl4 coding downstream 277343 16086166 ~ 16129376 (-)
LOC103030780 LOC108430129 coding downstream 371623 15980633 ~ 16035096 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding downstream 433711 15919470 ~ 15973008 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding upstream 394634 16822247 ~ 16928239 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 762202 17189815 ~ 17464293 (-)
LOC111192622 NA coding upstream 1040438 17468051 ~ 17476591 (-)
LOC103035515 NA coding upstream 1220838 17648451 ~ 17665261 (-)
LOC103035822 NA coding upstream 1241051 17668664 ~ 17669725 (-)
G52565 mfsd8 non-coding downstream 3754 16398198 ~ 16402965 (-)
G52560 NA non-coding downstream 27861 16376999 ~ 16378858 (-)
G52559 NA non-coding downstream 30034 16375147 ~ 16376685 (-)
G52538 NA non-coding downstream 66752 16292416 ~ 16339967 (-)
G52547 NA non-coding downstream 107018 16296010 ~ 16299701 (-)
G52654 NA non-coding upstream 167558 16595171 ~ 16651572 (-)
G52655 NA non-coding upstream 195136 16622749 ~ 16677399 (-)
G52662 NA non-coding upstream 250474 16678087 ~ 16765190 (-)
G52673 NA non-coding upstream 324888 16752501 ~ 16753583 (-)
G52676 NA non-coding upstream 331605 16759218 ~ 16760425 (-)
LOC111192725 NA other downstream 49759 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 179545 16226236 ~ 16227174 (-)
LOC103028883 LOC108430093 other downstream 186872 16161640 ~ 16219847 (-)
G52493 NA other downstream 221407 16182735 ~ 16185312 (-)
G52299 NA other downstream 1322151 15076296 ~ 15084568 (-)
G52652 NA other upstream 160537 16588150 ~ 16589783 (-)
G53164 NA other upstream 2158788 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 3095089 19522702 ~ 19570378 (-)
G53382 NA other upstream 3422337 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 4193956 20621569 ~ 20690422 (-)

Expression


Co-expression Network