LOC111192622


Basic Information

Item Value
gene id LOC111192622
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 17468051 ~ 17476591 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670301.1
aggtaggtagttaggtagCTAGAATAAAGGTAGGTTGAAAGGTGAACTTGAAAGGTAACCTtgaaaggtaggtaggtaggtagtttgTTAATCAGTTAGGTAGGTAGAAAACAGTTAGGTGGATAGGTAGACTTGATAGGTAGGCagttaggtaggtagttagaaaagaagaagaatgaagTCTGTAACAGCAGAAGCTGAAGGACAGGAGCTGACTGAGTTTGAGTCTGAGCTGAGAGAAGGTGAGATGAGAACTGAAGATGTTCTGGACGTTGTGGATTGTGAGGATTGTGAGGATCACTGTCAGAACGCTGATGGACGTTTGGATGATGTGGACGGTGATCAGGGCTCCGTGTTGCTCTGGGTACCCACTGGCCGTCGACTCGTCTCCGGGCTCCTGGGGCTGAACGTGGTGCTCCTGGGAGCCGCGCTGGTGGCTGGAGATGCTTTCCACCCTGAAGGTTTGCACCACCAGGAGCCGGAggtgtttctgctgctgctgatggcgCTGAGCGTGGCGTGGATGCTGTGGTACCTGCTTTGGGCACGGAAACAGCCAGGATTACCCCCACACACGGACCACCATGCAGGGGGCATCACTGTTACTGTGGTGTTAATGCTGTTTGCAGGCTTCAGTCTGttgctgtgtgtgttcatgATGGTTCATAACGTGCTGATGAAGGACTGTCACCCATCTGCTCGAGTTCTTCTACCGTTCATTCAAACTCCATTCCTCTGCCTCCAGACCTATCTGCTGTGGGCTCACTCCAAAGACTGCATCCACAAACACAGAATCCTCACAAGGTCTGGTCTAATGCTGATCCTGTGTACAGATATCCTGCTGTGGTTGAGCGCAGTAACAGAAGATTCCATTCATATGGAGATCGAGCTGGAGAGACAGTACAAACAGCCCATCATCAGAGCACAGTTAGacGAGGACGAGGGCATCAGAAATGCCTCAGATTGCCACTGTGGAAAGCAGCCGGTGTGCGGATCTCTGCGAAAAGGCTACGAGGTGCTGTACCCCTTCAACATGGAGTTCAGCCTGCTTGCGGGGTGCATGCTCTACGTCATGTGGAAGAACGTGGGCCGTCACGTGACCGGCACTCACTCGGGTCACGCCCAGAAGATCACCATGCGGATTGTGCACCACGGGGGCATCCTGCTGGGCCCTGTGCTGGGGCTGCTGGTTCTGATCACGGGGGTGGTGATCTTCGTGCTGTACCAGGTGTGGGTGGGTCAGCGGGGGAGGCGGCTCAGGGCCTTCCTGCTGTTCTACGGTTTCCACCTGAGCGTTATGCCGTTTATGGCGCTGTGCTCGCTGGTAGGCATGCTGGTGTACCGCCGAAAAGAGAGGCTGCCCAGCAGGGGGCGTGACAGGAAGCACGAGGACCCGGCGGTGAAGAACCCGACCCGTAGCCTGGacgtgctgctgctggtggggTCCGGACTGGGCCAGCTCTCTCTTTCATATTTCTCCCTGGTTGCTGCTCTCGCTGAGGGACCCAGAGGCATTCTGGGAAGTCTGGATCTGTCGTTTTCGCTGCTGAGCCTGCTGGAGCTGGTCCTCCAGACCATGTTCATCATCCAGGGGCTGCAggaacacacacatccacaccagAACACACACTCGAGTCGAACCGGGAAAGAGGAGAAGGAGTCAGCAGATGGGAAGGGAGCTTTTAAGATGGAGAAGACAGCTGAAGGTGCTGCTGGTTCTGCTGATATGGCTGAAGGAACAGCGTTCCTACAGAAAAGCAGTGATGCTGAAGCGTCCCCTGCAGGAACACCTGGACAAAACACTCATTCCTGGAGCAGGAGGACGATTCAGGAGATCTGCGCCTTCCTCATTCTATCCAACGTCAtgctgtgGGTGATTCCAGCGTTCGGGGCCCACCCTCAGTTTGAGAGTGGTTTGGGGAAGCAGTTTTACGGGTTCTCAGTCTGGTTCGTGTTGGTGAATCTGGGTCAGCCGCTCACTGTGTTCTACAGGATGCACTCGGTTGGAGCTCTGATGGAGCTGCTGATCTTCGCATGaactcaaaaacacatttacttaTTGCTCTATAAAATGCTGTGTATTGTTACTGTCTCTATGTAAAGAAGTTCCAGTGCTAggtattatatatctatttaggCAGTA

Function

GO: NA

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670301.1 True 2143 mRNA 0.53 7 17468051 17476591

Neighbor

gene id symbol gene type direction distance location
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding downstream 3758 17189815 ~ 17464293 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding downstream 539812 16822247 ~ 16928239 (-)
LOC103032046 NA coding downstream 1093710 16363613 ~ 16374341 (-)
shbg NA coding downstream 1308335 16140670 ~ 16159716 (-)
neurl4 neurl4 coding downstream 1338675 16086166 ~ 16129376 (-)
LOC103035515 NA coding upstream 171860 17648451 ~ 17665261 (-)
LOC103035822 NA coding upstream 192073 17668664 ~ 17669725 (-)
grem2 grem2,grem2b,LOC107746751,LOC107570400,LOC107659701 coding upstream 1105289 18581880 ~ 18610419 (-)
nat9 nat9 coding upstream 1167864 18644455 ~ 18648875 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding upstream 1180241 18656832 ~ 18689601 (-)
G52757 NA non-coding downstream 216428 17187540 ~ 17251623 (-)
G52759 NA non-coding downstream 310146 17157505 ~ 17157905 (-)
G52729 NA non-coding downstream 365585 17102233 ~ 17102466 (-)
G52728 NA non-coding downstream 369582 17098123 ~ 17098469 (-)
G52722 NA non-coding downstream 390097 17030713 ~ 17077954 (-)
G52850 NA non-coding upstream 117025 17593616 ~ 17645708 (-)
G52891 mtr,LOC107674399 non-coding upstream 299291 17775882 ~ 17791944 (-)
G52946 NA non-coding upstream 402216 17878807 ~ 17879433 (-)
G52947 NA non-coding upstream 432897 17909488 ~ 17910071 (-)
G52951 NA non-coding upstream 484955 17961546 ~ 18002313 (-)
G52652 NA other downstream 878268 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 1040438 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 1111091 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 1240877 16226236 ~ 16227174 (-)
G52493 NA other downstream 1282739 16182735 ~ 16185312 (-)
G53164 NA other upstream 1109810 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 2046111 19522702 ~ 19570378 (-)
G53382 NA other upstream 2373359 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 3144978 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 3307147 20783738 ~ 20787618 (-)

Expression


Co-expression Network