LOC103035515


Basic Information

Item Value
gene id LOC103035515
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 17648451 ~ 17665261 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670308.1
GCTAGGAGATGATCTAACAGccgttactgtgtgtgtttacatcagttCAGCTACCAGCAGCTGAACCACGTTATACTTTTagctttaaaatactttaatataaacataaaccaaGCGGAATATCAGCTGAATACACTTGGTTTCCTCTCTCCACACGAAAATGGTGATGGAAGACTATCAGGAGTTTTGCAGGAGGTGTTTGTACAAAGTGAACGAGGAGAGTTCGTGCAGTGCAGAGTCCAGCCACAGGGGGGCGCCATCTGCCATTCATTTCCATGGCAGACCTGTACTACAgccaatgctaaGCGAAGAGCAGCGTGTAGAAATGGCTAAACAAAGGCAGAAAgcgatggagagagagagcgagagacataCACTGAGAACCAGCTCTCTGCTGGAACGAGCCCAGGACGTCCTCAACCACTTACAGGTGCAAAATACGTCTCACTGTGAAGCAGAGCAGGGTGCTATCGGCTCTCCTCCAGACCCTCAGGATCTAAACCTCAGGAAAACAGTCGCTGAAGACCTGGCGCCCTGCAGGGTCTCCAGCGCTTGGCGAAGAGAGACCCTCAGACTTCTAAACAGTCGGATGGAGAGAGTGGAGAAGAGTGGAGAAAAGACGAGTGAAACAAGAACACAGCCGAGCTATTCTGGAGATGCTTATAAAGATGGTGAGAATAAAGCTGGAGAAGATACCCTGTCTGATAAGGAGAACGAGAGCCTCACACCAGAGCGCCCTCTTGTGGTGAAGTCTAGGAATACCTCTATTCGATGTTCTGTTGAGTCATGTGACTCTCCATTGGGTAGTCTTTCGCTGTGTGCCAGTCTTACGGGTTCCTACGCCCAGTTGCCGAGCCCCCTGCCCAGCTGCAACCCCATCACCCACCGCTTACGAAAACCAGCTCTGGCATCTTCAAGCAACATCCTCATCTCAGTCCCTGTCACTGAACTGGAGCTCAACAAGACAATGCCAGTCCAGTCTGAATCCCATGCTCCTGATTATCCTCCCCCTACTGGAGGAGACTGGAACTGCAGTTGCCCTGAGTTAGGCAGTCAAACGCCGCCTATGCCTAAGACCTCCACCCCCACTGACCATCATATCACCACAAGACCCACCACACCCATAGAGACCAGCACACTGAACCACAGTTCCCCGTTCCAGCGTTCCCCACCAGCTCCACTCAACCAGTCCTACGATGTGGAGAGTCCAGCTCCCAACATCCTCAGGCCCCACGTCGGATCAGGTTCCAGACCCTTTACTGCACCCCTCCAACGCAGACTGGAGTTCACAGGGAGACCACAGCTCTCCCCAGAGGACCAGAAGACCCAGGGGCATAAAACCAGTAATACACTTCAGGATAGAGATCAGCAGAAGGCGATGTGTTACCTGACCGCTTTGGCCCGAGGCTTCCTCACACGCAGACTCCTTCATACTGAGAAAATCAAACACCTGCGCAAAACTATACAGGATTCGATGGAGTTAAATCGTTGTTTCCAGGCTGATGCCCAGCAAAGAAGAGCCTCCTTTACCCCACAGGACCTTTCTCTTCAACACAGAGTCAGAGCACAGTTGCGTGCAGCTTTGTCTAAAGTCCATGAGATCTTCTTTGTTTGGCCTCTGAGAAGCAGACTAGCTCTGCTGCAGCAGGACCGGGAGCTACGCAACACGAGGAGACACCAAGAAAAGGAGAAATCTAAGAGCCCACTGGACCAGCAAGGCCTGTCTTCTGCTACGCAGAAATCTCTGGAACGAAAAAAACAGAGGGTTGGCATAAAGATCCAACTCAAACCAAAGAATTCCACAACAAGCGTCCTGCAGTCCACTCAGAGGCAGGATGTATTCATCAATTCTCAGAAGCTTAAACCTGTGAGAGTGGTGAGAAGGACCTCCTTTGCTCATCCTTTACTGGACTAgtggactctctctctccagtgttTCATCAATGTTCAAAGGTTTTAAGCaaatgtgggggggggggggggggatggagGATAgacctttttttcatttacttcaCACATAAATAGCACAGTTTTTTCTAAGttaatttctttaattaacCTTCGTTTACCacattttgtactattttaatagctatttttaaataaatgtttttatagcttcatgttgttttgtcatatgaaaagaaaagagcattattattattatagaagcACAGAAAACACAGCGAGACAGTCCT

Function

GO:

id name namespace
GO:0120031 plasma membrane bounded cell projection assembly biological_process
GO:0044782 cilium organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0060271 cilium assembly biological_process

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670308.1 True 2201 mRNA 0.49 10 17648451 17665261

Neighbor

gene id symbol gene type direction distance location
LOC111192622 NA coding downstream 171860 17468051 ~ 17476591 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding downstream 184158 17189815 ~ 17464293 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding downstream 720212 16822247 ~ 16928239 (-)
LOC103032046 NA coding downstream 1274110 16363613 ~ 16374341 (-)
shbg NA coding downstream 1488735 16140670 ~ 16159716 (-)
LOC103035822 NA coding upstream 3403 17668664 ~ 17669725 (-)
grem2 grem2,grem2b,LOC107746751,LOC107570400,LOC107659701 coding upstream 916619 18581880 ~ 18610419 (-)
nat9 nat9 coding upstream 979194 18644455 ~ 18648875 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding upstream 991571 18656832 ~ 18689601 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding upstream 1031733 18696994 ~ 18728233 (-)
G52850 NA non-coding downstream 2743 17593616 ~ 17645708 (-)
G52757 NA non-coding downstream 396828 17187540 ~ 17251623 (-)
G52759 NA non-coding downstream 490546 17157505 ~ 17157905 (-)
G52729 NA non-coding downstream 545985 17102233 ~ 17102466 (-)
G52728 NA non-coding downstream 549982 17098123 ~ 17098469 (-)
G52891 mtr,LOC107674399 non-coding upstream 110621 17775882 ~ 17791944 (-)
G52946 NA non-coding upstream 213546 17878807 ~ 17879433 (-)
G52947 NA non-coding upstream 244227 17909488 ~ 17910071 (-)
G52951 NA non-coding upstream 296285 17961546 ~ 18002313 (-)
G52995 NA non-coding upstream 524206 18189467 ~ 18189667 (-)
G52652 NA other downstream 1058668 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 1220838 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 1291491 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 1421277 16226236 ~ 16227174 (-)
G52493 NA other downstream 1463139 16182735 ~ 16185312 (-)
G53164 NA other upstream 921140 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 1857441 19522702 ~ 19570378 (-)
G53382 NA other upstream 2184689 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 2956308 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 3118477 20783738 ~ 20787618 (-)

Expression


Co-expression Network