LOC111192624 (LOC108430317)


Basic Information

Item Value
gene id LOC111192624
gene name LOC108430317
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 18730043 ~ 18741304 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670316.1
TGTTCCAGCAGTTCAGCAGCAGCCAAGATGCAgcttctcctctcctcccagCTCTGGATTTATCTCCTCATATCTCTCTTTATTCACACTCAGGCCTCCAATATCTGCACATCTCGAGGAGCCAGCACCTGCCAGCAGTGTTTGGCGGTTCATCATTCCTGCGCGTGGTGCTCTCAAGAGGAATTTGGGCTGGACGTGCCGGGCGCCTCCCGATGTGACCTCAAGAAGAACCTTCTAGCTGCAGGATGCAGGAGCGGAGCGCTGGAGTATCCCATCAGCCAGCTGCGCGTTACAGAGAACAAAACTCTCAGCGATAAGGCCTCAGGATCCACCACTGACGTCACTCAGATCCAACCACAGAAACTGCACATTACCCTCAGACCTGGTGAGCCCACAACTGAGATGATGAGATAACTAA

Function

NR:

description
PREDICTED: integrin beta-3-like

GO:

id name namespace
GO:0070527 platelet aggregation biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007044 cell-substrate junction assembly biological_process
GO:0030334 regulation of cell migration biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0060055 angiogenesis involved in wound healing biological_process
GO:0008305 integrin complex cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670316.1 True 418 mRNA 0.54 3 18730043 18741304

Neighbor

gene id symbol gene type direction distance location
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding downstream 1810 18696994 ~ 18728233 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding downstream 40442 18656832 ~ 18689601 (-)
nat9 nat9 coding downstream 81168 18644455 ~ 18648875 (-)
grem2 grem2,grem2b,LOC107746751,LOC107570400,LOC107659701 coding downstream 119624 18581880 ~ 18610419 (-)
LOC103035822 NA coding downstream 1060318 17668664 ~ 17669725 (-)
LOC111192707 NA coding upstream 381316 19122620 ~ 19143280 (-)
LOC103025356 NA coding upstream 696329 19437633 ~ 19459375 (-)
LOC103036701 LOC108430450 coding upstream 864251 19605555 ~ 19670670 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding upstream 941087 19682391 ~ 19839582 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 1160989 19902293 ~ 19906073 (-)
G53168 NA non-coding downstream 31916 18654192 ~ 18698127 (-)
G53175 NA non-coding downstream 83167 18645879 ~ 18646876 (-)
G53139 NA non-coding downstream 326643 18402279 ~ 18403400 (-)
G53135 NA non-coding downstream 330895 18350272 ~ 18399148 (-)
G53138 NA non-coding downstream 343051 18385769 ~ 18386992 (-)
G53184 NA non-coding upstream 36857 18778161 ~ 18867587 (-)
G53185 LOC108430338 non-coding upstream 37410 18778714 ~ 18786708 (-)
G53199 NA non-coding upstream 107425 18848729 ~ 18892877 (-)
G53209 NA non-coding upstream 186022 18927326 ~ 18927932 (-)
LOC111192726 NA non-coding upstream 376162 19117466 ~ 19120375 (-)
G53164 NA other downstream 62756 18586401 ~ 18667287 (-)
G52652 NA other downstream 2140260 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 2302430 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 2373083 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 2502869 16226236 ~ 16227174 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 781398 19522702 ~ 19570378 (-)
G53382 NA other upstream 1108646 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 1880265 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 2042434 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 2076535 20817839 ~ 20819409 (-)

Expression


Co-expression Network