LOC103036701 (LOC108430450)


Basic Information

Item Value
gene id LOC103036701
gene name LOC108430450
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19605555 ~ 19670670 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670333.1
CTGGAGCTCAGAGCGCTATCGACCTTTAAAGCGCCCGGAGAGAGGAGCAGCTCAGACTGGGAGAGGGAGTGCGATCCTCGGCAGTGTTCTGAGACTGCACTCGACCAATCCCACCAGCACCAGTACCGGTACCGGTACCAGTACCGGAGAACTACCGCACAAACCCCCCGGACTCAGCATGGACCCTCAGCAGGGGAGATAACCACTGGTGGATGTTCTGAGTTccagttgagttgagttgctGTTTAGAGTTGAGTTGAACTGAGTTGAGTTGAACAGAGTTGACTTGAATAGAGTTGAGTTGAACAGAGTTGAGTTGAACAGAGTTGAGTTGAATAGAGTTGAGTTGAATAGAGTTGAGTTGAACAGAGTTGACTTGAATAGAGTTGAGTGAAGGACGTTCTTCGAGCTGGATCTTCTCTCCCACAGGACTCAACCATGAcctcagagaaagagaagagaagGCACCCGTCGGAGCGGCGGAAGGAGAAGTCGCGGGACGCGGCGCGCTGCAGACGCAGTAAAGAGACGGAGGTGTTTTATGAGCTGGCTCATCAGCTGCCCCTCCCTCACAGCGTCCGCTCACACCTGGACAAAGCCTCCATCATGAGACTCACCATCAGCTTCCTCCGCACACGCAAACTGCTGGCATCAGGCTGCATGGGCCGACAGCCGAAAGAGGACATGCAGATGGACGCTCTGTACCTGAAGAGTCTGCAGGGCTTTGTTGTCGTGGTGACGTCAGAAGGGGACATGATCTTCCTCTCGGAGAACGTCAGTAAATTCATGGGTCTGACACAGGTGGAGTTAACGGGACACAGCATCTTCGATTTCACGCACCCCTGCGATCACGAGGAGATCCGGGAGAACCTCAGCATTAAAGcagGGCCGGTTTATGGCAGGAGGTGTAAAGAGCTGAACACGGAGAGAGATTTCTTCATGAGGATGAAGTGTACAGTTACCAGCAGAGGACGTACCGTCAACCTCAAATCAGCCACATGGAAGGTTCTCCACTGTACAGGTCATTTAAAGGTGTACACCAGCTGCCCCCCGCACGTGTTATGTGGATTTACGGAGCCCCCCCTCACCTGTGTGGTCATGTTATGCGAGCCAATCACAAACCCCTCCAATGTGGACACGCCCCTCGACAGCAAAACCTTCATGAGCCGACACAACATGGACATGAAGTTCATCTACTGCGACGAGAGGGTGAGATCTCTAATGGGCTACAGGCCTGAAGATTTGGTTGGACGCTCTGCGTATGACTTCTACCATGCGCTGGACTCCGACAGCATGACCAAGAGCCACCAGAATCtgtgtgctaAAGGGCAGGCGGTGAGCGGGCAGTACCGGATGCTGGCCAAACATGGAGGCTACGTGTGGGTGGAGACTCAGGGCACAGTGATCTACAACAGCCGTAACTCTCAGCCGCAGTGCATCGTCTGCATCAACTATGTTCTCAGTGAAATTGAAGAGAAAACCATCGTCTTCTCCATGGACCAGACGGAGGCGCTGTTCAAGTCCCGCGACATGCTGGGCGCCGGCGAACTCTTCTGCCAGGCCGGCTCGGTGTCGGACCCGGATAGCCTGCTCTTCAACAAGCTGAAGGAGGAGCCCGAGGAGCTGGCACAGCTGGCGCCCATGCCTGGAGACGCCATCATTGCCCTGGACTTTGGAAGGCCACAGTTTGAAGAGCAGTCCATCTTCTACAAATATCCCTGTCAGACTACAGGCAGCAAACTGTGGAAAATGGACTCTCCAGCTTCCAGCTCCGACAGCGGCCTGCCCAGAACCCTGTCCGACTCCATGCCCAGCCTGAACAacatcagcagctgctccacTCCTGAGAGTTCAGGAGGAGATTTTTACGGCACCGGAGAGAATGAGCTGAAAGTAGAGCTGACAGAAAGACTGTTCGCCCAAACCACCGAGTCCAACAGTCCCACTGAtacacagTTTGATCTGAATGATCTGGATCTGGAGACGCTGGCTCCCTACATCCCTATGGATGGGGAAGACTTCCAGCTGAACCCCATTGGTCAGGAGGAGCCTCTGCCTGAGGCGTGTCCGAGTCTGTACCCCACCCCCCAGCACAGCTTCAACTGCGTCACCCGCCTCTTCCAGCCCCTCGCCCCCTTCACCCCTGACACCAAGACCTGCCCCAGCACCTACCCCAACCCAGACATCCTGCCCCCATACCAGAGCCCTGCCACCACCCCGCTGCCCTCCAGAGGGGGCCGGCAGAACCTGCAGTGGCCCCCAGAGTCCTCTCTACAGTATGGAGGACCGGAGCTGGACGGACAGAATCTGACATGTGCTCAAAACCAGCAAAGAATTTTTGAAGACTTCGCTAAGCCATGTGATGACCTGGGCCTTGATCAGATTCCACCGTCCGCCAATTTTAAACGCAAGAGGCAGACCGTGTTCAGCTCCTCCTGCTCTTTCTCAAACACCCCTCAGGAGGGAATTCCTCGTAGCGAATCGATGGAAGACTTGTGGAAGCGAATGAAGACGATAACCAATGACAACTGTGCCTTTACCGCCAGAAACCCCACCAGCTCTGCAGTGCTTGAAGaCACTTTCTCATCCAGACCAGCAGCGGTGGATTCTCAGATCAGTGGAAATCAGCTTCCTCCAAACAAGCCGAGCTTCAGAGAGCACAAACGGCCTTTCACTGAGCATTTCTGCCCCCCTGAATTCAATCAGTACAGCATGCTGCCCTCCCCCAAACCCACAGggatGACGAGTCGACTGCTGGCTCCGTCGTTTGACTCGTTCTGTCTGACGGAGCTGACGCAGTACGACTGCGACGTGAACGTGCCGCTGCAGGGGAACCTCCACCTCCTGCAGGGCAGCGACCTTCTCAAAGCTCTGGACCAGGCCACatagaaccagaaccagaaccaagaGAACCACCCTGACCCGGTCCTTCAGCCAATACTGTGCCTAACAATCAGCATGCCTCACTCTCAACAGCTGCCTTTACCACACACCCagagactacacacacacacatttatatacacacacacaaacacacacacacaacacgaCACGGATGTAatgtgtattatatttttatctaagagttgttacttgtttataAGACTGTATACTTTTACTGATCTCTCTACGTGTTGCATATTCCGCTCGTGTTCAAGCATATTGAAGacaataatgtattaaaatatagaaagtctataaaaaaatactacatcTGCCA

Function

NR:

description
PREDICTED: endothelial PAS domain-containing protein 1-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0050794 regulation of cellular process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005488 binding molecular_function

KEGG:

id description
K09095 HIF2A, EPAS1; hypoxia-inducible factor 2 alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670333.1 True 3223 mRNA 0.53 16 19605555 19670670

Neighbor

gene id symbol gene type direction distance location
LOC103025356 NA coding downstream 146180 19437633 ~ 19459375 (-)
LOC111192707 NA coding downstream 462275 19122620 ~ 19143280 (-)
LOC111192624 LOC108430317 coding downstream 864251 18730043 ~ 18741304 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding downstream 877322 18696994 ~ 18728233 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding downstream 915954 18656832 ~ 18689601 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding upstream 11721 19682391 ~ 19839582 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 231623 19902293 ~ 19906073 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding upstream 371827 20042497 ~ 20089372 (-)
trnai-uau_7 NA coding upstream 631865 20302535 ~ 20302628 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding upstream 645346 20316016 ~ 20392206 (-)
G53357 NA non-coding downstream 3153 19596775 ~ 19602402 (-)
LOC111192626 NA non-coding downstream 99051 19503610 ~ 19506504 (-)
G53343 NA non-coding downstream 169466 19435683 ~ 19436089 (-)
G53342 NA non-coding downstream 172067 19433036 ~ 19433488 (-)
G53338 NA non-coding downstream 206347 19398815 ~ 19399208 (-)
G53361 NA non-coding upstream 50472 19721142 ~ 19795467 (-)
G53372 NA non-coding upstream 128515 19799185 ~ 19799391 (-)
G53374 NA non-coding upstream 133714 19804384 ~ 19804714 (-)
G53375 NA non-coding upstream 135625 19806295 ~ 19806499 (-)
G53376 NA non-coding upstream 137073 19807743 ~ 19808014 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 35177 19522702 ~ 19570378 (-)
G53164 NA other downstream 938268 18586401 ~ 18667287 (-)
G52652 NA other downstream 3015772 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 3177942 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 3248595 16343756 ~ 16356960 (-)
G53382 NA other upstream 179280 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 950899 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 1113068 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 1147169 20817839 ~ 20819409 (-)
G53996 NA other upstream 3420636 23091306 ~ 23091975 (-)

Expression


Co-expression Network