LOC103034301 (prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816)


Basic Information

Item Value
gene id LOC103034301
gene name prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19682391 ~ 19839582 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670334.1
gtgagtgagtgacagaGTGAGCGAGCGCAGCTCCAGCCCCACTGCGCGCTCGGACACGGGCGGCTCAAAGAGCGCGGACGGATCCTGCTGCTATCCGCAGCTCACGATACATACACGCAAAACGCGCGCGCGCTCGCTCTTGCACGCGCGGCACGCACGCGCATAAACACACAAGGCTAGACCAGCCACACGGCTTAAGGCTGccagagaaggaggaggaggaggattgcCCAGACCGATGGCTGCTGCGCGTTCATGAGGCTCGCCCACTGGAAGACCTTCACGTTCATACTGGGATAATTCAGGCTACTGGGATAATTCAGGCAACTGGGATCAGTCGTTTTCCAGCTTCTCCTGATTTCCACGTTTTTCCACGCGCTTTTCGCGCTTGGGAGTAACGTTATTCCCTGCGCTCGCGCTCTCGAGACTGATCAGTCTGGGCTCTGCCAGAAGGGGAGGATTCCTGTCCAGCTgatcacaacaacaacaaacgaGGAGCATCAAAGAAGAACAGCCAGCGTCTTCTGCTAATGATGATGATATTCTGCTGATCTTCTGCTGCTTTGATCTTTCGAGCTTCAGGATTTCGCACCTGACCTGTAGATATATTGTCTAGTCTAGCCTATATTGGTCCAGTCTCTCCACGTATGTCATAGGAACCAGAAGAAGAGACAGAACAAGAACCAGACGCATCTATTGACCTGACCAGATTGCAGACCAGCAATCCATCCACCTTCTTCCATtcttccattcatccattcattcatctatcTATTAATTTATCAATCTATCTACATGCATCGCtccacactgctgctgccaccGCCATCCTAACCACCGCCACCACCGACCCTGCCCCGACGGTACCAACTGCCATGTGAACCCTCCGCATTATCCGACGCTCCGTGGGTGCAACCAGTTGCATTCGGCCCCcgtcttcatcatcatcagcagcatcatcatcatcaccaccatcagcatcatcatGGTGGTCTACAACGGCTTGCTAAAGATCAAGGTGTGCGAGGCGCTCGACCTCAAGCCCACCCCCTGGTCGCTCCGCCACGCCGTCGGCACCCGCACGCAGGGCTTCCTGCTGGACACCTACATCGCCCTGAACGTGGACGACTCTCGCGTGGGCCAGACCTCCACCAAGCAGAAGACCAACAGCCCCGCGTGGAACGACGAGTTCGTCACCGAGGTCTATGACGGCAAGAAGATCGAGCTGTCCGTCTTCCACGACGCGCCCATCGGCTACGACGACTTCGTGGCCAACTGCACCATCCAATTCGAGGACCTGCTGCAGAACGGCAGCCGCCACTTCGAGGACTGGATTGACCTGGAGCCTGAGGGCAAAGTGTACGTCATCATCGACCTGTCAGGATCCTCCAGTGAAGCTGCTGCATCCAGTGAAAATGAGGAGCGAGTTTTCCGTGAACGCATGCGGCCCCGGAAGCGGCAGGGGGCGGTACGGAGGCGTGTCCATCAGGTTAACGGACACAAGTTTATGGCCACCTACCTGAGACAACCCACTTACTGTTCTCACTGTAGAGACTTCATCTGGGGAGTGTTAGGAAAGCAGGGCTACCAGTGTCAAGTGTGTACCTGTGTGGTCCATAAACGATGTCACGAGCTCATCATCACAAAGTGTCCCGGCCTGAAGAAGCAGGACGACACTCCAGAGGAGgtCGGTTCACAACGCTTCAGTGTGAACATGCCTCACAAGTTCAGTATTCACAACTACAAAGTACCTACCTTCTGCGACCACTGCGGCTCGTTACTGTGGGGGCTGCTGAGACAGGGGCTGCAGTGCAAAGTCTGTAAGATGAATGTTCATCGGCGCTGTGAGACTAACGTAGCTCCTAACTGCGGAGTAGACGCTAGAGGAATCGCTAAAGTCCTGTCGGATCTCGGAGTGACGCCAGACAAAATCTCCAACAGCACCCAGCGCAGGAAAAAGCTGACTCCAGGTCAGGAAGCCCAGCCGTCCGCCTCAGAACCGGCCTCATCAGACGACTCCGACCGCTGCAAATCAGCGCCGACGTCACCATGTGATCAGGAGCTATCAGAGCTGGAAAGCATACGGAAAGCGTTGTCATTTGGCCAGGAGCACAagtcttcctcctcctcctctatgAGCAGTGGGCTTCAGGGCACAGGAAGTGAGGGCCGCGAGAACGGAGACTTGAAGAGCATCCAGTCGAAGAGGATGAACCTGACTGACTTCTCCTTCATCAAAGTACTGGGAAAGGGCAGCTTCGGAAAGGTGATGCTGGCGGAGCTGAAAGGCTCTGATGAGGTTTACGCTGTAAAGGTGCTGAAGAAAGACGTAATCCTGCAGGACGACGATGTGGATTGCACCCTGACTGAGAAACGCATCCTGGCTTTGGCCAGAAAACACCCCTACCTGACCCAGCTCTTCTGCTGCTTCCAGACCAAGgatcGGTTGTTCTTTGTAATGGAGTATGTGAATGGAGGAGATCTGATGTTTCAGATCCAGCGCTCGCGGAAGTTTGACGAGGCTCGCTCGCGTTTCTATGCTGCTGAAGTTACTTCTGCCCTAATGTTCCTGCACCAACATGGCGTCAtctacagGGACCTGAAGCTCGACAACATCCTGCTGGACGCCGAGGGTCACTGTAAGCTGGCGGACTTCGGCATGTGTAAAGAAGGCATCCTGAACGGcgtcaccaccaccaccttctGCGGCACACCGGACTACATTGCTCCTGAGATCCTGCAGGAGCTTGAGTACGGGCCGTCGGTGGACTGGTGGGCGCTGGGGGTCCTGATGTACGAGATGATGGCGGGTCAGCCCCCGTTTGAGGCGGATAACGAGGACGATCTGTTTGAGTCTATCCTGCATGACGACGTGCTGTACCCGGTCTGGCTCAGCAAGGAGGCCGTCAGCATCCTCAAAGCATTCATGACGAAGAGTCCGAATAAACGGCTGGGATGTATGGTGTCTCAGGGCCTGGAGGAGGCCATCAAAGTTCATCCCTTCTTCAGAGAGATAGACTGGGTTCTCCTGGAGCAGAGGAAGATAAAACCTCCATTCAAACCACGCATCaaAACCAAGAGGGATGTGAATAATTTTGATCAGGATTTCACACGGGAAGACCCCGTCCTCACTCCTGTGGACGACGCCATCATTAAACAGATCAACCAGGAGGAGTTCAAAGGCTTCTCATACTTTGGAGAAGAGACATTGGCCTGAAATTTAGCAGCGTGGAACCATtccacactgatacacactcatacacatacatgtacacccttacactcacacacacttgcacacacacaaaaacatatacGTACGTCTGGTGAGAaatgtgaatgggcagaagtgcTGGTGACAGGGTAGGCTAAAACTGAGGCTAAAGATATGGCTAAGGCTATATGACTGTGTCTAAGGATATGGCTTAGGCCAAGGCTAAGGCTAGGTCTTTTTTAAGGCTGTGGCTAAGGCTATATGGCTAAGAAAAATGCTAGGCCTTTGCTAAGGCTATATGGCTAAGGCTATATGG

Function

symbol description
prkcea Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Is expressed in brain; peripheral neurons; and spinal cord. Orthologous to human PRKCE (protein kinase C epsilon).

NR:

description
PREDICTED: protein kinase C epsilon type-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K18050 PRKCE; novel protein kinase C epsilon type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670334.1 True 3530 mRNA 0.54 15 19682391 19839582

Neighbor

gene id symbol gene type direction distance location
LOC103036701 LOC108430450 coding downstream 11721 19605555 ~ 19670670 (-)
LOC103025356 NA coding downstream 223016 19437633 ~ 19459375 (-)
LOC111192707 NA coding downstream 539111 19122620 ~ 19143280 (-)
LOC111192624 LOC108430317 coding downstream 941087 18730043 ~ 18741304 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding downstream 954158 18696994 ~ 18728233 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 62711 19902293 ~ 19906073 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding upstream 202915 20042497 ~ 20089372 (-)
trnai-uau_7 NA coding upstream 462953 20302535 ~ 20302628 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding upstream 476434 20316016 ~ 20392206 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding upstream 702282 20541864 ~ 20556330 (-)
G53358 NA non-coding downstream 26547 19600392 ~ 19655844 (-)
G53357 NA non-coding downstream 79989 19596775 ~ 19602402 (-)
LOC111192626 NA non-coding downstream 175887 19503610 ~ 19506504 (-)
G53343 NA non-coding downstream 246302 19435683 ~ 19436089 (-)
G53342 NA non-coding downstream 248903 19433036 ~ 19433488 (-)
G53380 NA non-coding upstream 9238 19848820 ~ 19849065 (-)
G53384 NA non-coding upstream 37912 19877494 ~ 19877718 (-)
G53462 NA non-coding upstream 168365 20007947 ~ 20008162 (-)
G53467 NA non-coding upstream 193272 20032854 ~ 20033088 (-)
G53457 NA non-coding upstream 193781 20033363 ~ 20034632 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 112013 19522702 ~ 19570378 (-)
G53164 NA other downstream 1015104 18586401 ~ 18667287 (-)
G52652 NA other downstream 3092608 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 3254778 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 3325431 16343756 ~ 16356960 (-)
G53382 NA other upstream 10368 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 781987 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 944156 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 978257 20817839 ~ 20819409 (-)
G53996 NA other upstream 3251724 23091306 ~ 23091975 (-)

Expression


Co-expression Network