LOC103027095 (LOC108274166)


Basic Information

Item Value
gene id LOC103027095
gene name LOC108274166
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20984459 ~ 21384885 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670347.1
TCGGTCCCTGGCAGAGCTGAGCTCACAAACACATCGCACCTTTTTCCTCGCAGCGAACAAACGGCCAGCGACcgtccttcctcctcctctctttctcctcctcctcttcttcttctcctcctccttcttctctctcttctttttttctctctctgttttctcccGTGTTTTTCGAGGCGCAGCGCTCGTGCCTGTAGTGTCTGTAGCTGCTGCGGTAGAAGAAGGAGGACTGGGCGCTGGGTTTGGTTGGTGCTGAGCTTGACTGGAGGCTGAGGGCTGGAGGCTGAAggatgctgctggtgctggtgctgctgctgcatccaTCCGTGTCTCTGCTGAGAATCGAGTGAATCTGAATTGAATCGTTGATTCATTTGGgagtcttttttatttgttgtgttgtttgtacgttttttttttaaggggatTTGAAAAGGTTAGGCGattgctgatttatttattttttcagttttcctttttttctccccaattttgctctctAAACTGATGcagtgatttttgttttattatttaattttttggtgAACAAAGAGAGCCTGTAAAAATCAAGTCAATGCGGAAGCCATCAGCGAGCTTCTTCAGTGAGGCTGGTCGATCGAGGGGGGACTAGCCTACATGATGATGGTGCTTCTTTCAAGattGCGGATCAATACGTCAGAGTGGATGTGATTAGAAGGTTTGTGAACGGTGAAGGCCCTGCGAGGGCCGGCATATTAACCCCACTCTGAGAAgggtttagggttttttttccctcctttcctccgtcttcttcttcttttttttctgtccacCCAACGCTTCGGCCGGCGCAATGACTGTGAATTAAGCTACGCTCGTCGAGACCCGTGGCCGCCTGGTGCGCTCAGAAGTGTCCTGTAAAGAGTGTACTGGAACATCACTTTCGTGTGATGGAGACCGTGATGATGAAAAAAGGGCCAGAGTGTAGCTTAGCATTTTAGCATAGCAGCAGTGACTGGAGAGGGTTTTAGTTGAGCGCATAGCTTTAGTGTAGTCTAGTTGAAATATATCGTATAGTCTTATTTTTCTCTAATTTCAGATATAATTTGAATATGTTATGATATTCTTGGCTGCATATCTACACTACGTTAAATATGACTAGGCCCTAGCACAGGCCTTCATGTCTCTTTATCAGTGTAGAACAATGAATAAAGCCAAATTAGCCCAAATTATCTGCTGCAGCCCCATCTTTCCCATAGAAGCCATTCCTGTTTTAGGACTGGAACTCTAAAATtatcagtataaatatatatatatatatatatacatatattgcatttttgtagcttagttctattctattcatcCTTTTGATCCAAAACTCGATCCACCATGAGCTTCTCCATGCGTAACGGCGCGCACTTGATTTGGATAGGCCTGCTGGTTTGCTGCTTGGTCGACATAGGGGCGAGCATGGAGTTCACCGGCGCCGAAGGCCAGTGGGCGCGGTTCCCCATGTGGAACGCCTGCTGTGAGAGCGAGATGAGCTTCAACATGAAAACGAAGAGCTCGCACGGACTCTTAGTGTACTTCGACGACGAGGGATTCTGCGACTTCTTGGAACTGCTCATCCACAACGGTAGAATCAGCTTGCGCTTCTCGATCTTCTGCGCCGAGCCGGCCACGGTGCTGTCCGACACCGCCGTCAACGACAGCCGCTGGCACGCCGTCACGGTGCGCAGGAATTTCAAAAACACTACGCTAGTGGTGGACGACGAGATCAAGTGGGTGGAAGTGAAGTCCAAACGGAGGGACATGACGGTTTTTAGTCCTATGTTCTTAGGGGGGATACCTCCAGAACTGCGCTCCGTAGCCTTGCGCCTGACGTCCGCCTCCATCAAAGACCAAGTTCCCTACAAAGGATGGATAACCAATTTGAAGGTGAACGACTCTGAGCCGGCGATAGTCAGCAGCGACGGGATCACCAGCAACGTTTGCGAAGCTGACCACGTTTGCCTGAACGGAGGAGTCTGCAGCATCGTCAACGACCAGCCCATCTGCGACTGCTCCGAGACCGGCTTCCAGGGGAAGGACTGCAGTGAAGAAGAGGCCTACGTTGGAGGTCTTGCGCACCTGATGATGGCCGACCAAGGTAAAAGTAAAGTGAGGGAGGAGTACGTGGCGACCTTCAAGGGCTCGGAGTACTTTTGCTACGACCTGTCCCCGAACCCCATCCAGAGCAGCAGCGACGAGATCACGCTCTCCTTCAAGACCCTGCAGCGCAACGGCCTCATGCTCCACACGGGCAAATCCGCCGACTACGTCAACCTGGCGCTGAAGAACGGCGCCGTCTCTCTGGTCATCAACCTGGGCTCCGGGGCCTTCGAGGCCCTGGTGGAGCCTGTGAATGGGAAATTTAATGACAATGCCTGGCATGATGTGAAGGTTACCAGGAATCTCCGTCAGCACTCAGGCATTGGACACGCTATGGTTACAATATCCGTGGATGGAATTCTCACCACCACTGGATATACTCAAGAGGACTACACCATGCTAGGCTCCGACGACTTTTTCTATGTGGGGGGCAGTCCCAGCACTGCAGATCTGCCCGGATCCCCCGTTAGCAACAACTTTATGGGCTGCCTGAAGGAGGTTGTATACAAGAACAACGACGTGAGGCTGGAGCTGTCTCGCCTGGCCAAACAGggtgatgccaagatgaaagTGAGCGGAATCGTGGCTTTCAAGTGTGAGAACGTGGCCACCCTGGACCCGGTCACCTTCGAGACCCCCGAATCTTTCGTCACGCTCAGCAAGTGGACGGCGAAGAAGGCCGGTTCCATCTCCTTCGACTTCCGCACCACCGAACCCAACGGCCTGCTGCTCTTCAGCCACGGCAAAcccaagcagcagcagcagaaagacCCCAAAGGCCCCAAGACCATGAAGGTGGACTTCTTTGCCATTGAGATGCTGGACGGACACCTCTATCTCCTGCTGGACATGGGCTCGGGCACCACCAAGACCAAGGCTGTGAACAAGAAGGTCAATGATGGAGAATGGTACCATGTGGATTTCCAGAGAGACGGGAGATCAGGTACCATCTCTGTTAACTCTGTGCGCACTCCCTACAATGCTCCTGGAGAGAGTGAGATTCTGGACCTGGATGATGTTCTGTATCTGGGTGGTCTTCCTGAGGACCGGGCAGGTCTGGTCTTCCCCACGGAGGTGTGGACGGCTCTGCTGAATTACGGGTACGTGGGCTGCGTTAGGGACCTGTTCATGGACGGCCAGAGTAAAGACATCCGCCGCATCGCCGAGGCGCAGAGGGCCGTGGGGTCAAGCTTCCTGGgcctttttcaaaaaaaaaagggggggggccCCGGGGGGGGGGGCCCCCCAACAGTTGCCTTGGGGAAAAAAAGCAACCCCTGCCTGAACAGCGGCACCTGCAGGGAGGGCTGGAACCGATACGTGTGCGACTGCTCTGGTACCGGATACCTCGGCCGATCCTGCGAAAGAGACGCCACCATCCTCAGCTATGACGGCAGTAAGTTCATGAAGATCAAGTTACCAGTGGTGATGCACACCGAGGCAGAGGACGTGTCTCTCCGCTTCCGTTCCCAGCGAGCCTATGGAGTTCTAATGGCCACCACCTCCAGGAACTCAGCGGACACTCTGCGACTGGAGCTGGACGGAGGACGGGTCCGGCTCACTGTCAACCTAGACTGTATCAGGATTAACTGTACCACCAGTAAAGGCCCAGAGACCATCTTTGCGGGCCAGAACCTGAATGATAATGAATGGCACACAGTCCGTGTGGTCAGGAGAGGGAAAAGCCTGAAGTTAATGGTGGATGACCTGCAGCCGTCAGAAGGTCAAATCACAGGTGACCACACGCAGCTAGAGTTCCATAACATTGAGACAGGCATCATCACAGAGAAGCTCTACATGCCCGCCGTGCCGTCCAACTTCATCGGGCACCTGCAGGGTCTGGGATTCAACGGCATGTCCTACATCGACCTGTGCAAGAACGGGGACATCGACTACTGCGAGCTGAACGCTATGATTGGCTACAAGAGCATCGTGGCCGACCCTGTGACCTTCAAGTCTCGCTCTAGTTACGTGACCCTGCCCACTCTGCAGGCCTACTACTCCATGCACCTGTTTCTCCAGTTTAAAACCACCTCGCCCGATGGACTGATTCTCTACAACCGAGGAGACGGCAATGACTTCATAGTGGTGGAGCTGGTCAAAGGTTACATGCACTACGTGTCGGACCTGGGGAACGGTGCTCATCTAATCAAAGGCAACTCCAACACGCCCCTCAACGACAACCACTGGCACAACGTCATGATCTCACGAGACACCAACAACCTCCACACCGTCAAGATCGACACCAAGATCACCACCCAGACCACCATGGGTGCTAAGAACCTGGATCTGAAAGGTGACCTGTTTGTTGGAGGGGTGTCTAAGGAGATGTATAAGGACCTGCCTAAGCTGGTGCATTCGAAAGAGGGCTTCCAGGGCTGCCTGGCTTCTGTGGACCTGAACGGCCGATTGCCTGACCTGCTGTCGGACGCGCTGACCACCATGGGTCAGGTGGAGAGGGGCTGTGAAGGTCCAAGCACTACATGTCAGGAGGACTCGTGCTCCAATCAGGGCGTGTGTCTCCAGCAGTGGGAGGGCTTTACCTGTGACTGCAGCATGACGTCGTTTGGAGGACCTCTCTGCAATGATGCAGGAACTACGTACATCTTCGGACGAGACGGCGGGCTGATCGTGTACACTTGGCCACCCAACGACCGGCCGAGCACGCGGGCAGACCGACTGGCTGTAGGATTCAGCACCCAGCAGAAGGACGCAGTGCTGGTCAGAGTGGACAGCTCCTCTGGCCTCGGAGACTACCTGCAACTGCAGATAgagAAAGGCAATATCAGAGTGGTGTTCAATGTGGGCACCGACGACATAAACATTGAAGAGACCTCAAAGTTTGTAAATGATGGAAAGTACCACATAGTTCGCTTTACGCGGAGTGGCGGTAATGCCACCTTGCAGGTGGACGATCTGCCAGTCATAGAACGATACCCCACAGgcAACATTGATAACGAACGCCTGGCGATTGCTAGACAGCGAATCCCATATCGGCTTGGTCGAGTAGTTGACGAATGGCTACTCGACAAAGGTCGACAACTCACCATCTTCAACAGCCAGACCACTATAAAGATTGGCGGATGGGAGCGGGGCAGCCGGCCGTTTCAGGGGCAGCTGTCCGGCCTCTACTACAATGGCCTCAAAGTGCTCAACATGGCCGCCGAGGGCGACCCCAACGTACGCGTGGAGGGCAGTGCCCGGCTGGTGGGCGACCTGCCCTCCTCCTCCATCACCCCCCAGTCCAGTGCTTCGGCCACGGGCAACCGCTCGGAAACGTCCCCCTCGCTCACCgacatcaccaccaccaccgcgTCCAATCGGCAGGGCAAGCAGACCACCACGTCACAGGATGATCTGTTGGTAGCCTCCGCTGAATGTCCCAGTGATGATGAGGACATTGACCCATGTGACCCAACCTCAGCACACCCTCCTCTGACCGAGACGAAGGGCTACCCGAGCCCAGAGGTGATCCGGGAGTCCAGCAGCACCACGGGCATGGTGGTGGGCATCGTAGCAGCCGCCGCCCTCTGCATCCTCATCCTGCTCTACGCCATGTACAAGTACCGCAACCGCGACGAGGGCTCGTACCACGTAGACGAGAGTCGCAACTACATCAGCAACTCGGCCACGCAGCCCAACGGCGCCGCCGTCAAAGAGAAGCCCATCGGCGTGGCCAAGATCTCCAGcaagaataaaaagaacaagGACAAAGAGTACTACGTCTGATCCCACAGACATTCTCCCTCCCTGTGTTCAGACACTTACGGGGCAAAGGGGGAGGAGATGCCAACCTGTGTATAgtaattaagagaaaaaaaacacggcCTCAGTTTTAACTGAGACCAAATATACTGTTACTAACAATaagaaaatatactttatactcAAGCACACGAGAACTATACAAAAGCCGGAAGTGTGTACACAAGGAGTTCGGGGCaaagagagtatgtgtgtgtgacttcAGAGTCAATCCTTGGGGAAAAGAACGGAGCCAATGAATGAAACCCTTGATGCGTTTTTGAGGGTGAAGCACTCAAAGACAAGGCCACTCACTGCTCAGAACTGCTGAGCTTCTATTGTGTTTCATATTAtgttgcctgtgtgtgtgtgtgtcgccgGACATCCAGttcctcctcttcatcatctttcagaaaaaaactcaACACGAACATCTGGACCAGTACAAAGTACGAAAAACAAAGTACAGAGACGTTCACTATAAAAGAGATGAAAAGGACCTTATGAAAAAGAGACTTATCACTATGAGAAGCTACCTACTCTACTGTATGATTGTTAAATCAGCCAAAGTATTCGCCcccctgaccccgcccccttTTCTAACGGCAGTGTTGGCCAGTTGGAGACGTATACAAGGTGACAAGGTGACAGTGTGAAGACGATGAGGgggaaaacgaaaaaaaaaaactacaacagTAAAGGATCCAAACTTTTAAActaaaactcaaacaaaaagTCAAACAAATATGGAGGACCAATGCCTTGGTGTCACAGAGGACAATGGAGGCCTTATTAACAATCCAAGTGTACATCTACggttgttttcttttgttcgTATGTCGTACGTCACGACGCTGACGCTGACAGCGACGCTGACGACGACAgtggtgatgctggtgatgctTAAGAACGAACGGTAAAGAATGGTAAAAGCGTAAAAAACCGTGGCCGTTTGGGATAGTTTGAGAAAAACTCCATGCACGTGAAGTATCTTATTACATATGTTTATATACGGTGCAAAGACTATCTATGTGTGCTCTCTGGACTGTGGCTGAAGTGGTGTTTTATAGCCTGTTATATAGATGATGCCAACTACAGTATACCTGCTCTTCAAACATTTTCTAGTAAAATCCGACGGGAAAAcgactaaaaacagaaaaaaaataaatgttaatgtgtTGCTCTAGCGATAGAACCGTTTCTGCCATTAGCTATAAACATTTGGGTTcctgtatttttcattttcctcCTTTTACGTGCATCTTCAATGTCTATCGTTTATTTACGCCATTGTACTTTGATTTCCTTTGCAATTCTTTCTTGTGTGTCGACATACAGAGatgaacaagaacaagaacaagatcAAAAAGTTTGGGTTTGGGAAAGCAaagcaaaccaaaccaaatcaccACAGGGGaagcttttaaaaattatatgaaTTACAATACGAATCGTTCATGAATTGTTGAAGCAATATCCTTTTGCTCTTTTCAGTGACCAAACTAATTATGCATGGTCAATAGGACAAGGCTCTAATAAACAATGGCTCCATAACacctacaacaaaaaaaatatgaaaagagataacaaaaaaaataacgaatAAATAAGTAAACCGAACAAAAGACAATGAACTGGATcccaaaatacagtatatatgtatctGAACATCACGACTGGAAGACGCCAATCTCGGAGACGCCAGAAATTAAAGCGTATTGTTTGTGAACACACTCCTCTTTGCTATCTTGTACTCCACCGAATGTACAAGAGGTACAAAATACAGAACCTTCAGAATAAAAccttttgatttttgttttttgtgttttttatttgtgtacaaTTTTTCTAtgattcttttgtttttattgtgaaAATTCTTTGATGACCTCAAAGTGaagatttattatgaaaaaaaaaatagttttgaaaaatcaaatgactaaataaaatattaattaatactt

Function

NR:

description
PREDICTED: neurexin-1a isoform X3

GO:

id name namespace
GO:0051965 positive regulation of synapse assembly biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0090129 positive regulation of synapse maturation biological_process
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K07377 NRXN; neurexin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670347.1 True 7844 mRNA 0.50 24 20984459 21384885

Neighbor

gene id symbol gene type direction distance location
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding downstream 403855 20572412 ~ 20580604 (-)
LOC103047390 NA coding downstream 416264 20562271 ~ 20568195 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding downstream 428129 20541864 ~ 20556330 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding downstream 592253 20316016 ~ 20392206 (-)
trnai-uau_7 NA coding downstream 681831 20302535 ~ 20302628 (-)
LOC103044518 LOC108430683 coding upstream 270732 21655617 ~ 21669948 (-)
LOC103047279 NA coding upstream 445954 21830839 ~ 21870274 (-)
narf narf,LOC107581643 coding upstream 488604 21873489 ~ 21885441 (-)
ddit4 ddit4 coding upstream 534644 21919529 ~ 21921617 (-)
anapc16 anapc16,cj104 coding upstream 548384 21933269 ~ 21938448 (-)
G53610 NA non-coding downstream 158818 20822899 ~ 20825641 (-)
G53599 NA non-coding downstream 192962 20791208 ~ 20791497 (-)
G53573 NA non-coding downstream 228574 20755633 ~ 20755885 (-)
G53563 NA non-coding downstream 337950 20620723 ~ 20646509 (-)
G53556 NA non-coding downstream 347168 20636306 ~ 20637291 (-)
G53733 NA non-coding upstream 44890 21429775 ~ 21430104 (-)
G53740 NA non-coding upstream 102260 21487145 ~ 21487419 (-)
G53745 NA non-coding upstream 221894 21606779 ~ 21607090 (-)
G53747 NA non-coding upstream 222359 21607244 ~ 21607746 (-)
G53751 NA non-coding upstream 249876 21634761 ~ 21637166 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 165050 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 196841 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 294037 20621569 ~ 20690422 (-)
G53382 NA other downstream 1134109 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 1414081 19522702 ~ 19570378 (-)
G53996 NA other upstream 1706421 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 2956515 24341400 ~ 24351936 (-)
svil NA other upstream 3401366 24786251 ~ 24920590 (-)
jcad NA other upstream 3565727 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 4164465 25549350 ~ 25562139 (-)

Expression


Co-expression Network