LOC103044518 (LOC108430683)


Basic Information

Item Value
gene id LOC103044518
gene name LOC108430683
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21655617 ~ 21669948 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670348.1
CGATGTGCTCGACTCATCCCGATAGCAGAAGAAGACGCTTGTTTTGACGGCGGGTTTTACTGTTTTGGTTTAACCTGTGGCTGCAGTTCTGATCACAGAGCAGTTGACACTACTGTGTGTTTAAGGCACATTTTTGTGTCTTTTATTGTCTTAAATCAATGCTTAACTAACGTTATAAATGGATTTTACTGAGCGTTATGAGGATACCTGCTCCACAATAGCCGTTGCAGCCAGACATGGAGACTGCAGGCAGATCCAGAGGCTCCTGAGGAGAGGTTACTCTGTGGATGTAAAGGATAACCGGGGTTGGAACGCTTTACACGAAGCTGCAGCTGCAGGATCTTCGCAGTGTGTTCGCCTTCTCCTCACTGCTGCTGCCAGCTGTGAAAACTATGTCAACTCCTTGACACACAACTCTGAAACACCTCTCTATTTCGCTGCAAAAAATGGACACGTCCAAGTAGTCAACCGACTACTAAAGCGAGGTGCAGATATTAATAAGATGTCCAACGACCTCTCCTGCCCTCTTTTTGCAGCTGTGGATGGTGGCCATATGGAAGTGGTGAAGCTGCTGGTCAGTAAAGGAGCTGAGGTCAATGGAACTCATTCCACCTCTGACTGGTCGTGTCTCCACCAGGCAGTTTACAAGGGTCACACAGAGATTGTGAAGTTCCTGGTGGGCCTGTGTTCGCTAGAGGCTGTGGATGACTATGGGATCACGCCGCTGTTTGTTGCTGCACAGTATGGACGTCATGAGTGTCTACAGGTCCTCGCAAATGCTGGAGCAAATGTAAATTGCCAGGCGAAGGATCTGGCCACCCCTCTCCTTATTGCTGCCCAAGAGGGACATTTATCCTGTGTGGATCTACTTCTGTCTCATAAGGCTGATCCAAACATCTACTGCAACGAAGATCAGTGGCAGCTTCCTATTCATGCTGCAGCCCAGTTTTGCCACCCCAGAATCCTGGAGAAATTGATCCCTGTGACGAGCAGAGAATGCGATCAGGGTAAAGAAAAGGTCAGCCCTGTCTATCTGGCAGTGCTCAGTGGTCAAGCGGACAGTCTTCGGCCGCTGCTCAGAGCAGGCTACAGCCCGGACGCCCAGAACTGCAGGCAGTTTGACTACTGCTGTCCTCTAGAAATGACACTGTGGTGCAACTCTTGGAATTCTGACAGTGAACGCCACCAGAGTCGAGAGATCACTCAGATGCTGCTCGCTGCTGGGGCGCACGTCATGATGCCCACATATGTATTTGCACTTCAGGGAAACGTACCTGAACATCTGCCACTGATCCTGGAGCATGCCGGCCTCCCTAAGGAGGACCATCTGAAAGAGCTGGTCCAGACAGCACTGAAAGAAATGCAGAGTGCCCCCTTTTGGCTCCCGTTGCTGCTTAAAGCAGGCCTGGACCCTACTCTGCTTCTTCAGCATAAAATGCTTGAAGAGGCAGAGACCAGGGTGCTTAATTTCTTGCTGGAGTTTATTAATTGGAAGACTCTGCCCTCCACGATGCTTCAGATTCTCGCTCGCCGTCGAGCCGAGGGAACTTGGACCCCACAGAAGCATTTCGAGAGTGTTCCTGCTCTGACTCATCTGTGTAGACTGGCAGTGCGAGCTGCAGTGGGCAGCGATGCTCTGTCTAAATCCTCCTTTGTTCAGCAGCTGCCTGTTCCGACGCTGCTGCAGGACTACCTCCAGTTCAGCGATATCTCCAGTGCCTACACCTACACGGCCGCCTGACTGACAGTTTGTGCTAATTAAGTTATCTCGCTGGTTCCACTGCAGTATTTTGTACATAGctttaataaaactttaatagCCATCTTGTGAAA
>XM_022670349.1
CAGTTCAGCTCATACTTTAACCTTCCTGGGGCTCTTTTATTCAGTAAATATCAGCGCTGTGTATGCTGACAGGCAGCTGAATTAGTaaacaagctagctagctagcgttagctaggtAATACAGTTTGTGGGCAGCTAGAAATACATaggctaggttaactagctaacaaactatgtatgttaatatttagccagctagctagtatatctagctagttagctaaccggTACTGTGTTTAGTTCGGTTACCTAGGCGGCGTATATTAGTGTTCTGTGTTTTCTAGCTAGCTTTAGTAGTTAGCAAGCAAGCTGTCAAGGGGAACTCAGAACTCAACCATTAGCTGGCTAAGcaagctaatgttagctggaACACTTGGTTCATACTAGTAATTTTTGCTAAATATCTAAGTTATTAGAATATTGTGATGTTTAAAACGCATATTTTTCTAGTGAGCTAACCTCAGCTAAAGCTGGCTAGTTGTCACCTTATAGCTAACGCTAGGATAGTTAACGCTAGCTGGCCAAGCTAGCTGCGTAGCTAGCTGTCAAACGTGCTTTATTCTAGTCATATTTAGTTTATGTTAAACGTATTTTATAACTCCTGACATTATATAATAAGCTACCTAAGCTACGTaggctagctaagctagctagctagttaatttacctcagcttcCAACTctattagctagctaagttagtaGTTAGCGTGAGGTTTCAAACTTGCTTCATACTAGTCATATTCAGTAAAGTTAATATTTAGCATATTATGACTGTTAACGTTATGTTTTGCTAACTACCTTTCTAGTTACACAACTCAATGTGTAACTTTACCTGCACCTTTATACTTTGGATatctgcacatttatacattcaGTCATATTCAACGTATGCCCGTGCAATGCCTTTTGTCTatatgtctatagtGACACTACTGTGTGTTTAAGGCACATTTTTGTGTCTTTTATTGTCTTAAATCAATGCTTAACTAACGTTATAAATGGATTTTACTGAGCGTTATGAGGATACCTGCTCCACAATAGCCGTTGCAGCCAGACATGGAGACTGCAGGCAGATCCAGAGGCTCCTGAGGAGAGGTTACTCTGTGGATGTAAAGGATAACCGGGGTTGGAACGCTTTACACGAAGCTGCAGCTGCAGGATCTTCGCAGTGTGTTCGCCTTCTCCTCACTGCTGCTGCCAGCTGTGAAAACTATGTCAACTCCTTGACACACAACTCTGAAACACCTCTCTATTTCGCTGCAAAAAATGGACACGTCCAAGTAGTCAACCGACTACTAAAGCGAGGTGCAGATATTAATAAGATGTCCAACGACCTCTCCTGCCCTCTTTTTGCAGCTGTGGATGGTGGCCATATGGAAGTGGTGAAGCTGCTGGTCAGTAAAGGAGCTGAGGTCAATGGAACTCATTCCACCTCTGACTGGTCGTGTCTCCACCAGGCAGTTTACAAGGGTCACACAGAGATTGTGAAGTTCCTGGTGGGCCTGTGTTCGCTAGAGGCTGTGGATGACTATGGGATCACGCCGCTGTTTGTTGCTGCACAGTATGGACGTCATGAGTGTCTACAGGTCCTCGCAAATGCTGGAGCAAATGTAAATTGCCAGGCGAAGGATCTGGCCACCCCTCTCCTTATTGCTGCCCAAGAGGGACATTTATCCTGTGTGGATCTACTTCTGTCTCATAAGGCTGATCCAAACATCTACTGCAACGAAGATCAGTGGCAGCTTCCTATTCATGCTGCAGCCCAGTTTTGCCACCCCAGAATCCTGGAGAAATTGATCCCTGTGACGAGCAGAGAATGCGATCAGGGTAAAGAAAAGGTCAGCCCTGTCTATCTGGCAGTGCTCAGTGGTCAAGCGGACAGTCTTCGGCCGCTGCTCAGAGCAGGCTACAGCCCGGACGCCCAGAACTGCAGGCAGTTTGACTACTGCTGTCCTCTAGAAATGACACTGTGGTGCAACTCTTGGAATTCTGACAGTGAACGCCACCAGAGTCGAGAGATCACTCAGATGCTGCTCGCTGCTGGGGCGCACGTCATGATGCCCACATATGTATTTGCACTTCAGGGAAACGTACCTGAACATCTGCCACTGATCCTGGAGCATGCCGGCCTCCCTAAGGAGGACCATCTGAAAGAGCTGGTCCAGACAGCACTGAAAGAAATGCAGAGTGCCCCCTTTTGGCTCCCGTTGCTGCTTAAAGCAGGCCTGGACCCTACTCTGCTTCTTCAGCATAAAATGCTTGAAGAGGCAGAGACCAGGGTGCTTAATTTCTTGCTGGAGTTTATTAATTGGAAGACTCTGCCCTCCACGATGCTTCAGATTCTCGCTCGCCGTCGAGCCGAGGGAACTTGGACCCCACAGAAGCATTTCGAGAGTGTTCCTGCTCTGACTCATCTGTGTAGACTGGCAGTGCGAGCTGCAGTGGGCAGCGATGCTCTGTCTAAATCCTCCTTTGTTCAGCAGCTGCCTGTTCCGACGCTGCTGCAGGACTACCTCCAGTTCAGCGATATCTCCAGTGCCTACACCTACACGGCCGCCTGACTGACAGTTTGTGCTAATTAAGTTATCTCGCTGGTTCCACTGCAGTATTTTGTACATAGctttaataaaactttaatagCCATCTTGTGAAA
>XM_022670350.1
CCCGATAGCAGAAGAAGACGCTTGTTTTGACGGCGGGTTTTACTGTTTTGGTTTAACCTGTGGCTGCAGTTCTGATCACAGAGCAGTTGTGAGACACTACTGTGTGTTTAAGGCACATTTTTGTGTCTTTTATTGTCTTAAATCAATGCTTAACTAACGTTATAAATGGATTTTACTGAGCGTTATGAGGATACCTGCTCCACAATAGCCGTTGCAGCCAGACATGGAGACTGCAGGCAGATCCAGAGGCTCCTGAGGAGAGGTTACTCTGTGGATGTAAAGGATAACCGGGGTTGGAACGCTTTACACGAAGCTGCAGCTGCAGGATCTTCGCAGTGTGTTCGCCTTCTCCTCACTGCTGCTGCCAGCTGTGAAAACTATGTCAACTCCTTGACACACAACTCTGAAACACCTCTCTATTTCGCTGCAAAAAATGGACACGTCCAAGTAGTCAACCGACTACTAAAGCGAGGTGCAGATATTAATAAGATGTCCAACGACCTCTCCTGCCCTCTTTTTGCAGCTGTGGATGGTGGCCATATGGAAGTGGTGAAGCTGCTGGTCAGTAAAGGAGCTGAGGTCAATGGAACTCATTCCACCTCTGACTGGTCGTGTCTCCACCAGGCAGTTTACAAGGGTCACACAGAGATTGTGAAGTTCCTGGTGGGCCTGTGTTCGCTAGAGGCTGTGGATGACTATGGGATCACGCCGCTGTTTGTTGCTGCACAGTATGGACGTCATGAGTGTCTACAGGTCCTCGCAAATGCTGGAGCAAATGTAAATTGCCAGGCGAAGGATCTGGCCACCCCTCTCCTTATTGCTGCCCAAGAGGGACATTTATCCTGTGTGGATCTACTTCTGTCTCATAAGGCTGATCCAAACATCTACTGCAACGAAGATCAGTGGCAGCTTCCTATTCATGCTGCAGCCCAGTTTTGCCACCCCAGAATCCTGGAGAAATTGATCCCTGTGACGAGCAGAGAATGCGATCAGGGTAAAGAAAAGGTCAGCCCTGTCTATCTGGCAGTGCTCAGTGGTCAAGCGGACAGTCTTCGGCCGCTGCTCAGAGCAGGCTACAGCCCGGACGCCCAGAACTGCAGGCAGTTTGACTACTGCTGTCCTCTAGAAATGACACTGTGGTGCAACTCTTGGAATTCTGACAGTGAACGCCACCAGAGTCGAGAGATCACTCAGATGCTGCTCGCTGCTGGGGCGCACGTCATGATGCCCACATATGTATTTGCACTTCAGGGAAACGTACCTGAACATCTGCCACTGATCCTGGAGCATGCCGGCCTCCCTAAGGAGGACCATCTGAAAGAGCTGGTCCAGACAGCACTGAAAGAAATGCAGAGTGCCCCCTTTTGGCTCCCGTTGCTGCTTAAAGCAGGCCTGGACCCTACTCTGCTTCTTCAGCATAAAATGCTTGAAGAGGCAGAGACCAGGGTGCTTAATTTCTTGCTGGAGTTTATTAATTGGAAGACTCTGCCCTCCACGATGCTTCAGATTCTCGCTCGCCGTCGAGCCGAGGGAACTTGGACCCCACAGAAGCATTTCGAGAGTGTTCCTGCTCTGACTCATCTGTGTAGACTGGCAGTGCGAGCTGCAGTGGGCAGCGATGCTCTGTCTAAATCCTCCTTTGTTCAGCAGCTGCCTGTTCCGACGCTGCTGCAGGACTACCTCCAGTTCAGCGATATCTCCAGTGCCTACACCTACACGGCCGCCTGACTGACAGTTTGTGCTAATTAAGTTATCTCGCTGGTTCCACTGCAGTATTTTGTACATAGctttaataaaactttaatagCCATCTTGTGAAA

Function

NR:

description
PREDICTED: ankyrin repeat and SOCS box protein 3-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10325 ASB3; ankyrin repeat and SOCS box protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670348.1 False 1833 mRNA 0.50 10 21655617 21669948
XM_022670349.1 True 2655 mRNA 0.46 10 21655617 21669786
XM_022670350.1 False 1820 mRNA 0.50 10 21655617 21669931

Neighbor

gene id symbol gene type direction distance location
LOC103027095 LOC108274166 coding downstream 270732 20984459 ~ 21384885 (-)
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding downstream 1075013 20572412 ~ 20580604 (-)
LOC103047390 NA coding downstream 1087422 20562271 ~ 20568195 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding downstream 1099287 20541864 ~ 20556330 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding downstream 1263411 20316016 ~ 20392206 (-)
LOC103047279 NA coding upstream 160891 21830839 ~ 21870274 (-)
narf narf,LOC107581643 coding upstream 203541 21873489 ~ 21885441 (-)
ddit4 ddit4 coding upstream 249581 21919529 ~ 21921617 (-)
anapc16 anapc16,cj104 coding upstream 263321 21933269 ~ 21938448 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding upstream 376548 22046496 ~ 22054088 (-)
G53757 NA non-coding downstream 1922 21653436 ~ 21653695 (-)
G53754 NA non-coding downstream 14089 21640367 ~ 21641528 (-)
G53751 NA non-coding downstream 18451 21634761 ~ 21637166 (-)
G53752 NA non-coding downstream 18796 21636445 ~ 21636821 (-)
G53747 NA non-coding downstream 47871 21607244 ~ 21607746 (-)
G53838 NA non-coding upstream 69501 21739449 ~ 21744033 (-)
G53850 tdrkh non-coding upstream 122620 21792568 ~ 21798437 (-)
G53851 tdrkh,LOC107702489 non-coding upstream 128511 21798459 ~ 21808456 (-)
G53858 NA non-coding upstream 216606 21886554 ~ 21888629 (-)
G53861 dnajb12 non-coding upstream 223478 21893426 ~ 21897580 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 836208 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 867999 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 965195 20621569 ~ 20690422 (-)
G53382 NA other downstream 1805267 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 2085239 19522702 ~ 19570378 (-)
G53996 NA other upstream 1421358 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 2671452 24341400 ~ 24351936 (-)
svil NA other upstream 3116303 24786251 ~ 24920590 (-)
jcad NA other upstream 3280664 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 3879402 25549350 ~ 25562139 (-)

Expression


Co-expression Network