LOC111192646


Basic Information

Item Value
gene id LOC111192646
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26621657 ~ 26627863 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670411.1
TCGTTTATTCGTGGAGTAACACGTGTTCTGTGTGAGAACTGCTGGATTAAGAacataataaaagaaacaatgagaggtagaaagagaaaaTTTGTGAAAGACTGTTGCAATGAGAGATCTACAGCACCACCTAATCCCAAAAGGAAGAGAAGTGTGTCACCATCCAAAGAAAGGGAGAAAGCAGCATTTACAATCCTGTCATTGTCACCTGAAATGATCCAGGAGATCCTCTTTAATCTCTCTGCAACAGATGTGGTTTCTTTTGGATCCACTTGCCGTTATTTTCACGAGCTGAGCCTGAGCCAGGCAGTGTGGAAGAGACTGTACTGGAGGAAATTCATTGGCCCAGCTCCAGAAGTCAATTGGAGGAGGTTCACCATCCTGAGGAGGAGCCAGGGCCTTGCCATGCAGCGCCTGAAAAAAGGTGTGCATCGTATTGGATTGCATCAGCAGCGTGCCAGGGCTCCGCGGCCAACAGGGGTCCAGCTGTTCAACAGTGCCCTGGCATTGGGCTTCCGTAGGGTGGAGGCCATACTTGACCAAACCCTGCTTTGGGACTACAATGGCACTATCTTTGTGCTCTACACCCCCGCAGGAAGAGCGTCATGGTCAAATCCATACAGCTTCTCAGTACTGTGCTACCAAGCCATAGATTTTGATGTGGACCCTCGCTGGAACCACAACCTCCGCCAGTACATCTATGTGCTAACGCTGAGAGAGAGCAGTGGCAAACCTCCAGAGTCTGTGGGAGACCCAGGCTCTGTTGGTGACACTGTGGAGGTGTACAAGTGCGACACCCACGAAAAATTTGTTTTATGTCTTTCCACTCTACTTTATCCTTCACACAGCTGAGTGGGTCAGAGAACCATCGCTTACTCCTGCTGCTGACAGagcatgGAAAACCGTATTCAATGCATGTAAATGAAACTAGGTACCGCAGGCCGATCTCCTACACCACAGAGCTGACTCCAAAGACACTTTCCTGTCAACTGCCAAACCTTCCAGTCAAACAGCTCCACACCAGTTCAAACAGCACTGTGTATATTAAAGCTGATGGCTCAGCTTTTGCAGAAGTGCATTCTCCAGGAGCGCTCCGCCAGCTGTTTGGGACTTATGAAGGTTTTAATCCCATTGGTAGTGAAATGGTTCTCCCACTGAGTCTGCCATCCAGAgtCGTGAAATGCTCTCTGGGGCCTAACCACATCTGTCTGCTGGATAACTGTGGAAGGATCTTCATGCAAGGCTGCAACCACCATGGCCAGTTAGGAACTGGAGACAAGATTGATCGTGCTGAGCCCACTCTGGTTCCACGCAACGCCTCATCTCTTTACTCCTCATCGGACTGTATCTACCTTATCTGCTGCCATGACATAACTGAACCCCCTGCACGTTTCTACATACCACCTGAAGTCAATGAGAATGAGAAACTGCACATGGACCTCACTCAAATGAAGAGATGTGTCAGTACCAAAAGGGGGATCAAGATGCTGCAGAGGGCTGTAAATGAACACATGACAGGCCTAAGTCCTGCCCACAAAGACTTCCTTGACTCAGCACTGTCCATAATCCTGCATGGGGAGAGCAGATCCACAGTGAAGCCAGAGCAGCAGCCTCATTCATAAACAAGACTGTCGAACAGTTTACTCTGTATGACCAGTACCTCTTTATTtcacataaagaataaaggtaCCTAGCAACATAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670411.1 True 1704 mRNA 0.48 9 26621657 26627863

Neighbor

gene id symbol gene type direction distance location
lzts3 lzts3,LOC108265122,LOC107712591 coding downstream 7108 26601463 ~ 26614549 (-)
ubox5 NA coding downstream 22335 26594340 ~ 26599322 (-)
fbxl17 fbxl17,LOC107570989 coding downstream 92453 26095111 ~ 26529204 (-)
efna5 efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629 coding downstream 655592 25780429 ~ 25966065 (-)
lrrc2 lrrc2 coding downstream 1000392 25612122 ~ 25621265 (-)
LOC103043953 fabp1,LOC103043953,LOC108430333,LOC107704576,LOC107573351,LOC107726869 coding upstream 12638 26640501 ~ 26643368 (-)
LOC103043649 LOC103043649,LOC108430332 coding upstream 20676 26648539 ~ 26653586 (-)
LOC103024013 adra1aa,LOC108430341,LOC107553034,LOC107699645,LOC107671010,LOC107713032,LOC108264882,LOC105894890 coding upstream 256780 26884643 ~ 26920418 (-)
LOC103022658 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040 coding upstream 391269 27019132 ~ 27023268 (-)
LOC103022143 NA coding upstream 396759 27024622 ~ 27028494 (-)
G54592 cdc14b non-coding downstream 70121 26546072 ~ 26551536 (-)
G54580 NA non-coding downstream 301164 26314592 ~ 26320493 (-)
G54574 NA non-coding downstream 444510 26139316 ~ 26177147 (-)
G54572 NA non-coding downstream 598553 26022850 ~ 26023104 (-)
G54524 NA non-coding downstream 626984 25939702 ~ 25994673 (-)
G54613 mrps27 non-coding upstream 44045 26671908 ~ 26676623 (-)
G54623 NA non-coding upstream 72733 26700596 ~ 26701882 (-)
LOC111192648 NA non-coding upstream 98788 26726651 ~ 26734830 (-)
G54651 NA non-coding upstream 121213 26749076 ~ 26749279 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding upstream 176738 26804601 ~ 26810668 (-)
ccl28 NA other downstream 45232 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 51718 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1059518 25549350 ~ 25562139 (-)
jcad NA other downstream 1623537 24950612 ~ 24998120 (-)
svil NA other downstream 1701067 24786251 ~ 24920590 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 133269 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 538823 27166686 ~ 27168510 (-)
G54873 NA other upstream 841355 27469218 ~ 27473347 (-)
G54947 NA other upstream 1100848 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 1398876 28026739 ~ 28043251 (-)

Expression


Co-expression Network