LOC111192707


Basic Information

Item Value
gene id LOC111192707
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19122620 ~ 19143280 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670896.1
ATGCTGATGCTGATGGCGCCTCGCGGTGCACGAGGCGCTCACGAGGAAGGAAGGGAGATCAGTCCGGATCAGACTgacatcatcatcctcatcagtCCGGTGCTGCTCATTCCCGCTGGAgtggtgctgatgctgatgatggAGATGCTGATGGAGGAGGATGACAGGAGGTGCTGGTGGTTTGGCGatAGTCAAGGAAGAGACCAACTGCATCCCCAAGAGCAGACGTCCAACACAAAATCTGAGGCTGTTCCTGCACAAGAAGCTTCTAACAGTGTCATAGTGCCTGCCCTGCCTCCTGTTATAGAGATGGAACCGaacattacTGAGAGAACAAATCTGGTCACAACCAGCCCAATCCTGGCCAAGAAGGACCAGCAACAGTCTCAGCCGCAAAATTTACAGGCTCTAAGTAAAGGAGAAGAGATAGTCAATGAAAGAGACCAACTGCATCCCCAAGAGCAGACGTCCAACACAATATCTGAGGCTGTTCCTGCACAAGAAGCTTCTAACAGTGTCATAGTGCCTGCCCTGCCTCCTGTTATAGAGATGGAACCGAACATTACTGAGCGAACAAATCTGGTCACAACCAGCCCAATCCTGGCCAAGAAGGACCAGCAACAGTCTCAGCCGCAAAATTTACAGGCTCTAAGTAAAGGAGAAGAGATAGTCAATGAAAGAGACCAACTGCATCCCCAAGAGCAGACGTCCAACACAATATCTGAGgacTGTCAACATAAGATAGTCATTGCAACTGTTTCAAGCATGAACAAATGTGTCGCATGTGATGGACCTTTTGCATCACTCAAATGGATTGGTCTAAAGTGTAAAGTCTGCTCTTGTTTCTGGCACAAAACCTGCTttacaaaaatggaaaagaatGTCCAAGACTCAGTGTCATGGGTATGTATATTCCGTGTTTTTTAAGAGTTGCCATTTATTGCCAAGTGTTACATAGTAATGTTCTATTTTCTGGTATCAGGGAGAAAGGGATTCAAGTTCAGATGAGGATAAATCAGATGAAGAGTATGTGCCAGAGACAGACAACTCAGACAGTGAATCAGACAGTGCAGTGGAGTCTCCAATAGAATGGCCAAACAAAATCCAAGTCAATAAGCAAAATGTGAAAGCTGTCCACTCCAACTTCACCAAATCTGGCAGTTTGAAGttagaccaaaaaaataaatgcagtggAAAACAGAGTGAAAAGTCGATGGAAAGTGTTTCTCTAGACAAAGAAGCTGATTTATTTTGCTATGAGGAGCAGGTTTCAGGTGTAGAATCGCATGGTGAATCAGACAGTTCTACAGAATTAGAAGATACACTTTCAAATAAAGATCAGATTGAGCTTCTTTCTAATTGCAAACTGTCCTCAGAAGCTGCAGCTTCAGGCAGGAGACCAAACAGCTTGGGTTTAAGGTTAATAACTACAACAGAACCAGTGGACACTCACAAGAGTGAGTGTGAAGATTTTCCAGATGCATCACTGACAGGACAAGGGGGTTCAACAGCTGTTGCTGATTGTCTTCAGTCATCTGAAATTTCTTGTTCTGAAAACAAGAAGAACTACTGTTACATTTGTGGAAAACCACAGTCAAAAATTGCTCGTCACTTGAAGACCCACATGGCAGAAGTTGAAGTTGCAAAGGCTTTGTCATTTCCAAAGCATTCAAAAGAACGTAAAACATTACTGGAAAAAATTAGGAACAAGGGAAACTATCAGCATAATTCAAATGTTTTACAGAAAGGAAGTGGCTCGCTCAAAGTAAAAAGAAGACCAAACAGAGCCTGTGACTCGAAACAATTTGTGCACTGCATGCATTGCAAAGGGATGTTTGTGCGCAAAGACCTATGGAGGCATGTAAAACGATGTTCTTCAAAGCCTGGAACTGTAAACGCAGAGAAAGGAAGAACCAGGGTTCTGGGTCTGGCTACTCTGGCAGAGTCTACAGTTTCACAACAAATATCCCAAGGGGTTTGGAAGCTTTTAAGTGCAATGAAGCAAGATGTGATTGCATCTGTTGTGCGCAATGACTTTTGCATTCTGCAGCTAGCACAGTCTTTCTTCAACAAACATGGGAATGACCCAACCAAATTTGAGTACATTAGGCAGAAACTCCGTGAAATTGGAAGGTTTTTGCTGACTTTGCGCAGCGAGTCTTCTGTCTACAGCCTAGAAGAGGCTGTAAAACCTGCCAATTTTTCAAAAGTTATTGAAGCAGTTAAGAAGGTGTCAGGCTATGATGAAGAAATGAACTGCTACCAAACACCAAGTCTAGCTCTGAAACTGGGGCACACATTGCAGAAGGTCTGTGAGATCATTCACTGTAGGGCCCTTATGGCAGAAGATGAAGAGTTGATCAAGTCAACggagacatttaaaaaactttatacCACTAAATGGTCAGAGCTTGTTTCACACAGGGCTTTAGGGACACTGAGTGAAGCAAGATTCAACAAGCCATCAACACTGCCTTTCACCCAAGATGTTCAGCTTCTTCATAAACATCTGGAGACAGCTGCAGATGCAGCATCTGAAAATCTGAGGAAGACACCCTCACCGCAAAGCTATGCTGAGCTTGCCAAATCTACACTTGCAAGGATCATTGTTTTTAACCGGAGACGTGCTGGAGAGGTCTCAAAAATGCATCTTAAATGCTTTCAAGACAGGGATAAGACTCTTCTGCATGAAGATGTTGCATTTGGCCTTTCCAATTTCGAAAAGAAACTTTGCAGTCATTTCTGCAGAGTTGAGATCAAAGGTAAAAGAGGCAGAAAGGTCGCTGTCCTTCTCACACCAAGCATGGTTGATGCTCTGACACTTTTGGTCAGCTCAAGACTACAATGTGGAGTTCCAGATGCAAACAACTTCTTGTTCGCCAGACCCAGCTGTCAAAGTTATTACAGAGGCCAGGACTGTCTGAGGATTTATGCAGTTCAGTGTGGTGCACAAAATCCGGAACATCTCCGATCAACACACTTGCGGAAACATGTGGCTACTCTCTCACAAGTCCTCAATCTGAAAAACAATGAATTGGATCAAGTTGCAGACTTCTTGGGACATGACATTCGTGTACACCGGGAGTACTATAGACTCCCCGAAGCAACAACTCAGCTGGCTAAGATATCAAAACTCCTGCTGGCTATGGAAAAAGGATGTCTTCCCGATCTGCAGGGCAAATCACTTGATGACATTGAGATTGAAGGTATGCATTTACAAGTGCATTTTGGCAGTACCTTAAGGTGGggcacatttaaatgttttctagT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670896.1 True 3270 mRNA 0.44 10 19122620 19143280

Neighbor

gene id symbol gene type direction distance location
LOC111192624 LOC108430317 coding downstream 381316 18730043 ~ 18741304 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding downstream 394387 18696994 ~ 18728233 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding downstream 433019 18656832 ~ 18689601 (-)
nat9 nat9 coding downstream 473745 18644455 ~ 18648875 (-)
grem2 grem2,grem2b,LOC107746751,LOC107570400,LOC107659701 coding downstream 512201 18581880 ~ 18610419 (-)
LOC103025356 NA coding upstream 294353 19437633 ~ 19459375 (-)
LOC103036701 LOC108430450 coding upstream 462275 19605555 ~ 19670670 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding upstream 539111 19682391 ~ 19839582 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 759013 19902293 ~ 19906073 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding upstream 899217 20042497 ~ 20089372 (-)
LOC111192726 NA non-coding downstream 2245 19117466 ~ 19120375 (-)
G53209 NA non-coding downstream 194688 18927326 ~ 18927932 (-)
G53199 NA non-coding downstream 229743 18848729 ~ 18892877 (-)
G53184 NA non-coding downstream 255033 18778161 ~ 18867587 (-)
G53185 LOC108430338 non-coding downstream 335912 18778714 ~ 18786708 (-)
G53227 NA non-coding upstream 26569 19169849 ~ 19171075 (-)
G53234 NA non-coding upstream 75367 19218647 ~ 19219263 (-)
G53317 NA non-coding upstream 126250 19269530 ~ 19301099 (-)
G53319 NA non-coding upstream 137456 19280736 ~ 19283478 (-)
G53326 NA non-coding upstream 140872 19284152 ~ 19287211 (-)
G53164 NA other downstream 455333 18586401 ~ 18667287 (-)
G52652 NA other downstream 2532837 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 2695007 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 2765660 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 2895446 16226236 ~ 16227174 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 379422 19522702 ~ 19570378 (-)
G53382 NA other upstream 706670 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 1478289 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 1640458 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 1674559 20817839 ~ 20819409 (-)

Expression


Co-expression Network