LOC111192637


Basic Information

Item Value
gene id LOC111192637
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 23063904 ~ 23255571 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650045.1
aagcctattgtccatcagaataaaacattaaacaagccaatgaaaaatttacagtagcttagccccgcccactgcatcAGAAACAAACTCGGACAATAGGGTATGGCAGCACCAGAGCCAACAAAGCGAAAGCTGGCAGTGGAAAGTGGGTGAGCATGCTActgctgctgaaaacaactCTTGTGGAGACGCTAAGAGATCCATACAGACTGTGGACTGGTGTACCCAATAACAGCTGAAGGGCAACCCTAAAAACACCCCTGTTTGGATTTTGAAGTTGCTGCCTGTTTCTTTCACTTCTAACAAACAGAAACGGCCAATCTGTGAGCTGCTTTAATTAGAGATGAGGCTGCAGACTGAAGCTGGAGGATTCATG
>XR_002650046.1
TACAAAACTCTGTagagggcttttaatttgaaatgacAGATGACAGGAATTGGAGACAGGTGCAGAGCTTAATTACTctgagcagtgtttagtttgTTACTGCACCACAAAACACCACTcagtactgttttaaaaaacagtaaaacctTAAACTAAAGCCATAAACAGACAACAGAAAGCTACAGTTGACCACACGTGAGTGAAATTCACAGAGATAAAGGCAGACAGTTAACAAACATATGCTAATTGTGAGTTACGTCAGCTTCCTACTTTAGATACTATTCTAGCTACACCTGTAGCTACAGCTCCtgtctttcagctggaaaacaaaCAGTTTAGAGGCAGAAgtaaactgaataaaatcataCAGAGAGCTGGCAGTGGAAAGTGGGTGAGCATGCTActgctgctgaaaacaactCTTGTGGAGACGCTAAGAGATCCATACAGACTGTGGACTGGTGTACCCAATAACAGCTGAAGGGCAACCCTAAAAACACCCCTGTTTGGATTTTGAAGTTGCTGCCTGTTTCTTTCACTTCTAACAAACAGAAACGGCCAATCTGTGAGCTGCTTTAATTAGAGATGAGGCTGCAGACTGAAGCTGGAGGATTCATG
>XR_002650047.1
TACAAAACTCTGTagagggcttttaatttgaaatgacAGATGACAGGAATTGGAGACAGGTGCAGAGCTTAATTACTctgagcagtgtttagtttgTTACTGCACCACAAAACACCACTcagtactgttttaaaaaacagtaaaacctTAAACTAAAGCCATAAACAGACAACAGAAAGCTACAGTTGACCACACAGCTGGCAGTGGAAAGTGGGTGAGCATGCTActgctgctgaaaacaactCTTGTGGAGACGCTAAGAGATCCATACAGACTGTGGACTGGTGTACCCAATAACAGCTGAAGGGCAACCCTAAAAACACCCCTGTTTGGATTTTGAAGTTGCTGCCTGTTTCTTTCACTTCTAACAAACAGAAACGGCCAATCTGTGAGCTGCTTTAATTAGAGATGAGGCTGCAGACTGAAGCTGGAGGATTCATG

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650045.1 False 376 lncRNA 0.45 4 23063904 23254789
XR_002650046.1 True 618 lncRNA 0.41 4 23063904 23255571
XR_002650047.1 False 441 lncRNA 0.43 4 23063904 23255571

Neighbor

gene id symbol gene type direction distance location
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 998901 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 1009816 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 1125456 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 1142287 21919529 ~ 21921617 (-)
narf narf,LOC107581643 coding downstream 1178463 21873489 ~ 21885441 (-)
zeb1 zeb1 coding upstream 1238744 24494315 ~ 24607305 (-)
mtpap NA coding upstream 1815883 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 2130119 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 2195541 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 2218314 25473885 ~ 25483984 (-)
G53986 NA non-coding downstream 92200 22964001 ~ 22971704 (-)
G53982 NA non-coding downstream 119923 22943770 ~ 22943981 (-)
G53980 NA non-coding downstream 155855 22907826 ~ 22908049 (-)
G53976 NA non-coding downstream 177970 22858391 ~ 22885934 (-)
G53977 NA non-coding downstream 189986 22867904 ~ 22873918 (-)
G54021 LOC108429368 non-coding upstream 21263 23276834 ~ 23277253 (-)
G54027 LOC100695194,LOC101477368,LOC108429368,LOC108273705 non-coding upstream 67118 23322689 ~ 23322999 (-)
G54028 NA non-coding upstream 127151 23382722 ~ 23383118 (-)
G54029 LOC108429368,LOC107571188,LOC107654548,LOC107753275,LOC107653103,LOC107718535,LOC107582197 non-coding upstream 141242 23396813 ~ 23397047 (-)
G54031 NA non-coding upstream 178452 23434023 ~ 23434272 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 2244495 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 2276286 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 2373482 20621569 ~ 20690422 (-)
G53382 NA other downstream 3213554 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 3493526 19522702 ~ 19570378 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 1085829 24341400 ~ 24351936 (-)
svil NA other upstream 1530680 24786251 ~ 24920590 (-)
jcad NA other upstream 1695041 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 2293779 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 3302835 26558406 ~ 26569939 (-)

Expression


Co-expression Network