LOC111192639


Basic Information

Item Value
gene id LOC111192639
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 24604025 ~ 24604660 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650049.1
tgtatataggaaatacagaaaaaagacagagatgGATAACGGGCAGCTGCAGTGAAGAAAACACAGTATGGAATGAAAAGGATAGGCAGAAGAACAGCCCATAAACACGGAATATCCCAGAGTAAAGTTCTTTCCAAAGTTTCCCAAGTGAAGTTAGGACGTGTTGGACGCCACACGTGTGTGTTTTAGCGTGTAACAGGCAGAAGGCAACCAGTTTTTGGTGTTTGTAGGCTGTGTTGGCTGCTGCTGCCACTACATTACTGGCTGGgtggtagttagctagctaaggctGAGAGGAGGGGAGGACTGGGATTCCGAGCACAGCAGCCTATCCTATATAAGGAATGCGTCCATACTGATGGATCACACTCAGGGCTTGGGCGAGGAGAGGCTCCTTTAGCTGCTGGACTCCAGACAGCTGTTACTGAATTTGGctctgctctttttttattattcacaaCTGCttgtttttagccttttttaggGGGTTGTCTTGTTCTTTTTGTAAAGAATTTTTAAGTTTTGACGTTGCTCTAGCGAACTGTTTTTTCCACACAACCTTGGCACTGTGTTGTAGTGCTAAGTTGCAGTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650049.1 True 594 lncRNA 0.45 2 24604025 24604660

Neighbor

gene id symbol gene type direction distance location
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 2539022 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 2549937 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 2665577 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 2682408 21919529 ~ 21921617 (-)
narf narf,LOC107581643 coding downstream 2718584 21873489 ~ 21885441 (-)
mtpap NA coding upstream 466794 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 781030 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 846452 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 869225 25473885 ~ 25483984 (-)
LOC103037139 LOC108442001,LOC108265961,LOC107697601,LOC107712558,LOC105890695 coding upstream 881902 25486562 ~ 25505546 (-)
G54227 NA non-coding downstream 111055 24492701 ~ 24492970 (-)
G54224 NA non-coding downstream 140893 24459779 ~ 24463132 (-)
G54204 kif5b,LOC107568141,LOC107654561,LOC107753262 non-coding downstream 263200 24340011 ~ 24340825 (-)
G54202 NA non-coding downstream 271955 24331608 ~ 24332070 (-)
G54188 NA non-coding downstream 313248 24272991 ~ 24290777 (-)
LOC111192640 NA non-coding upstream 11385 24616045 ~ 24637375 (-)
G54237 NA non-coding upstream 112821 24717481 ~ 24718187 (-)
G54238 NA non-coding upstream 121137 24725797 ~ 24726344 (-)
G54239 NA non-coding upstream 135176 24739836 ~ 24740055 (-)
G54276 NA non-coding upstream 206160 24810820 ~ 24812627 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 252089 24341400 ~ 24351936 (-)
G53996 NA other downstream 1512050 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 3784616 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 3816407 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 3913603 20621569 ~ 20690422 (-)
svil NA other upstream 181591 24786251 ~ 24920590 (-)
jcad NA other upstream 345952 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 944690 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 1953746 26558406 ~ 26569939 (-)
ccl28 NA other upstream 1968740 26573400 ~ 26576425 (-)

Expression


Co-expression Network