LOC111192649


Basic Information

Item Value
gene id LOC111192649
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27411234 ~ 27412937 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650060.1
GAAAAGGCAGAAGTTGCAAAAGCAGAATTATTTAGGCCACAAAAGGTACAATTAAGTACTTTTTGATGTGTTCGACTAGCGCTAGTTTTAACTTAACTTTAGTTGTGATAAAGTCAGGGtgataaaaatacaagaaaacataaacaaatagaaatagaaatagagcaTATCAACTAGCATATCAATCTCTGTTTCTAATCAgtgctttaaatatatatagagagaaagaaaaattgtGATATCCCCCTGAGATAAGAtttcaaatatcaaatatcaaaatcTTAAAGTGCAAGGGTATCTTGTTGAGCAAGAGATCAGGTCTACTTCTTGACTTAGGATCTAatagaaaaagtgagaaaacaaaccaaaaaaacccTAAATCGAACTTCTAGGGAGCTTAAAACAAGACTGCTTCACCTACTGAACCCATAACACCAGTAGTACCGCTGGCCACCACTAGCCAGCAGTGTAACACAGGCTTTACTGGGGCTCGGCTGCCCTGTCCACATTCAAGGCTCTGACTAAGAGCAGCTGGTTTCTCAAAGACCAGCATCTAAACTGGACTCTGGACTCACAgtagttctctctctcctctaaaaCTCTCGCCCTGACTCCTCTCCCGTCTCCCGTCTCCAGTCTCGGCACACTCTGCGTTTCCTGTGTAGCCAGTGCTCTCGACTGACATGAAAAGAGCAACAGAGAGCCGCGgggagtaaaaaaaagagagagagatacagagagagagagagagagagagagagacagagagagcctCGCGGGGATGGAGAAGCATAACAACGCAGGGAGAGGCAGAGCTAACACCTGCAGTTCCTGTCTTACGGCTACGCCCCCGGCAACGGCCCAGACGGCCCTCTCCAGGAGGCGGAAAAGCGGGAGCCGAAAATGGAAGGCAGCCACATGACTGCAGGGCACGGCAATGGCGGCGGCGGAAAGAAACACATAACCGAAGGGTGTGTTATATACGGGAATCCTCGCAGGGATGGCTGTCGGGACCGGAGggcagaaagagaagaagaagaagagctgtGGTACAGTCTATCAGTCTATCAGCAACAGTCGAGAAAGCAGGCAGCCGCACTTTGCAGGACCGTAAAACTGCACATTTAGGCGTTTAGAGACTATAAAGAGTGGGTCGCAACTTAAATTCACACTTCATACAGTGTCAAGACTGTcagttaatgattcaataataagaaagagacttgTCGAATATAGTATCCAATGGAGAGTTCCAATGCAAAATCACTGCTGACCAAGACTTTAAGATTTTAAGacagaaactgaactgaaaaatGAACAGAGGAGCTCCTCCTGGTGAGGGCTAACAAAGAGCCAATATTGTGCCTAATTCAGTCAAGAAAGTCAAAAGTGAGAAAGGGGCGGGGCTTCGAGTGGGCCAGTGGGCTACAGGTGTAGTTTTCACAACTGAAAGTTTGGACCAAAGTTGACGTTTAATTAGTGCAGTAAAGAGATTTGCTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650060.1 True 1502 lncRNA 0.45 2 27411234 27412937

Neighbor

gene id symbol gene type direction distance location
LOC103044021 LOC103044021,LOC108430310,LOC103358995,LOC101071916,LOC104927948,LOC103366907 coding downstream 151434 27240990 ~ 27259800 (-)
LOC103044306 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007,LOC105891618 coding downstream 175073 27222840 ~ 27236161 (-)
srrd NA coding downstream 200201 27207308 ~ 27211033 (-)
cldn5 cldn5 coding downstream 337216 27071878 ~ 27074018 (-)
ufd1 ufd1l coding downstream 362172 27041506 ~ 27049062 (-)
LOC103030651 cit coding upstream 94766 27507703 ~ 27588964 (-)
LOC103030338 LOC108413054 coding upstream 191934 27604871 ~ 27659305 (-)
epgn NA coding upstream 318802 27731739 ~ 27755834 (-)
LOC103042060 LOC103042060,LOC107565988 coding upstream 321907 27734844 ~ 27753958 (-)
LOC103029383 LOC106585208,LOC102795852 coding upstream 579525 27992462 ~ 27996332 (-)
G54869 NA non-coding downstream 166136 27243080 ~ 27245098 (-)
G54716 NA non-coding downstream 350783 27058737 ~ 27060451 (-)
G54702 NA non-coding downstream 437142 26973568 ~ 26974092 (-)
G54699 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 non-coding downstream 438241 26962935 ~ 26972993 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding downstream 600566 26804601 ~ 26810668 (-)
LOC111192650 NA non-coding upstream 249389 27662326 ~ 27663868 (-)
G54916 NA non-coding upstream 299535 27712472 ~ 27714921 (-)
G54920 NA non-coding upstream 306716 27719653 ~ 27720578 (-)
G54954 lipg,LOC107667539 non-coding upstream 349691 27762628 ~ 27767606 (-)
G54965 NA non-coding upstream 524185 27937122 ~ 27938370 (-)
G54854 dhx37 other downstream 242724 27166686 ~ 27168510 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 631520 26761132 ~ 26779714 (-)
ccl28 NA other downstream 834809 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 841295 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1849095 25549350 ~ 25562139 (-)
G54873 NA other upstream 56281 27469218 ~ 27473347 (-)
G54947 NA other upstream 315774 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 613802 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 740484 28153421 ~ 28157449 (-)
LOC111192657 NA other upstream 1004796 28417733 ~ 28423955 (-)

Expression


Co-expression Network