LOC111192650


Basic Information

Item Value
gene id LOC111192650
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27662326 ~ 27663868 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650061.1
ATACTGACCCACCTTAATATACACACAGAGACAATCAAGCTTAACCAAAGAACCTCTACAGAGGAGATTACACACTAGAATGTTTACAGAGACACTGCTGATTCCTGCTGGACAGACGAACAACAGTCAGAAATCTCTGAGTCACAATCGCTGGCAAGATGACgacacaagcgaccaaagaaacccaattttttttgtattttccttgttgaaaaattacaataaccacTGAATATATTTCCATAAATtca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650061.1 True 251 lncRNA 0.38 3 27662326 27663868

Neighbor

gene id symbol gene type direction distance location
LOC103030338 LOC108413054 coding downstream 3021 27604871 ~ 27659305 (-)
LOC103030651 cit coding downstream 73362 27507703 ~ 27588964 (-)
LOC103044021 LOC103044021,LOC108430310,LOC103358995,LOC101071916,LOC104927948,LOC103366907 coding downstream 402526 27240990 ~ 27259800 (-)
LOC103044306 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007,LOC105891618 coding downstream 426165 27222840 ~ 27236161 (-)
srrd NA coding downstream 451293 27207308 ~ 27211033 (-)
epgn NA coding upstream 67871 27731739 ~ 27755834 (-)
LOC103042060 LOC103042060,LOC107565988 coding upstream 70976 27734844 ~ 27753958 (-)
LOC103029383 LOC106585208,LOC102795852 coding upstream 328594 27992462 ~ 27996332 (-)
plcxd3 plcxd3,LOC107667565,LOC107711897,LOC107686393 coding upstream 387947 28051815 ~ 28083920 (-)
LOC103039388 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107686394,LOC107667551,LOC105894181 coding upstream 421869 28085737 ~ 28150372 (-)
G54846 NA non-coding downstream 156454 27147415 ~ 27505872 (-)
LOC111192649 NA non-coding downstream 249389 27411234 ~ 27412937 (-)
G54869 NA non-coding downstream 417228 27243080 ~ 27245098 (-)
G54716 NA non-coding downstream 601875 27058737 ~ 27060451 (-)
G54702 NA non-coding downstream 688234 26973568 ~ 26974092 (-)
G54916 NA non-coding upstream 48604 27712472 ~ 27714921 (-)
G54920 NA non-coding upstream 55785 27719653 ~ 27720578 (-)
G54954 lipg,LOC107667539 non-coding upstream 98760 27762628 ~ 27767606 (-)
G54965 NA non-coding upstream 273254 27937122 ~ 27938370 (-)
LOC111192655 NA non-coding upstream 335762 27999630 ~ 28008669 (-)
G54873 NA other downstream 188979 27469218 ~ 27473347 (-)
G54854 dhx37 other downstream 493816 27166686 ~ 27168510 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 882612 26761132 ~ 26779714 (-)
ccl28 NA other downstream 1085901 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 1092387 26558406 ~ 26569939 (-)
G54947 NA other upstream 64843 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 362871 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 489553 28153421 ~ 28157449 (-)
LOC111192657 NA other upstream 753865 28417733 ~ 28423955 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other upstream 890859 28554727 ~ 28600510 (-)

Expression


Co-expression Network