LOC111192655


Basic Information

Item Value
gene id LOC111192655
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27999630 ~ 28008669 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650064.1
TCCACCGCAAAATCACAGTTTCTTTTGCTAGAAAATCCAGTGCCTTTCTGGCCCCACTATCTTGCTGTTCTGGAACCAGCGAACCTGTGACATGAGAGGCCAAAGGAAGGGGCGTTCAAGCGTCACAAAAAAGATGTGTTCTGTTTCCGGTTTGTGGACCACGCccacattttacaccagagaaCTCTGGCGGCGCGCGGAGCTGAAAGCTAGCAGcacaggatgtaaacaGAAGTGCTGTAACGCCGCTCAGGGTCATTCTAATCCACTGTAAAGCATCCACCCACCGAAACACCCAGCTCTGAAGAGCCCTCTGCCCAGGCCTAATCACGCTGCCCATTCACAACACCACCCCACTTATTCACCAACCACGAGGACCTGAGAGAGAGCAGCCTGACCACACCACTCTCCAACATCTGCCAAATCAGCCCTGAAGAAGCTTCCAGACTCAAAATCAGCAGACTTCACACAGCACTGAGGTCAGATCTCAAAGAAGTCTCCAGTGAGAGGTGGTGTACTCACAGTCTCTGAGTCCGGGTGGAGGCGAAGAACCCCAGCCTCCAGATTCAGCTCCTCAGCAGAGCTTCTGTCCAGCCCAGTCAGCAGCCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650064.1 True 610 lncRNA 0.53 3 27999630 28008669

Neighbor

gene id symbol gene type direction distance location
LOC103029383 LOC106585208,LOC102795852 coding downstream 3298 27992462 ~ 27996332 (-)
epgn NA coding downstream 243796 27731739 ~ 27755834 (-)
LOC103042060 LOC103042060,LOC107565988 coding downstream 245672 27734844 ~ 27753958 (-)
LOC103030338 LOC108413054 coding downstream 340325 27604871 ~ 27659305 (-)
LOC103030651 cit coding downstream 410666 27507703 ~ 27588964 (-)
plcxd3 plcxd3,LOC107667565,LOC107711897,LOC107686393 coding upstream 43146 28051815 ~ 28083920 (-)
LOC103039388 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107686394,LOC107667551,LOC105894181 coding upstream 77068 28085737 ~ 28150372 (-)
selenop LOC108412737 coding upstream 251828 28260497 ~ 28262000 (-)
orai1 orai1,LOC108414442,LOC106585507 coding upstream 436916 28445585 ~ 28451464 (-)
LOC103034781 rnf34 coding upstream 472743 28481412 ~ 28492730 (-)
G54965 NA non-coding downstream 61260 27937122 ~ 27938370 (-)
G54954 lipg,LOC107667539 non-coding downstream 232024 27762628 ~ 27767606 (-)
G54920 NA non-coding downstream 279052 27719653 ~ 27720578 (-)
G54916 NA non-coding downstream 284709 27712472 ~ 27714921 (-)
LOC111192650 NA non-coding downstream 335762 27662326 ~ 27663868 (-)
G55029 NA non-coding upstream 155144 28163813 ~ 28165094 (-)
G55030 NA non-coding upstream 159984 28168653 ~ 28169114 (-)
G55079 NA non-coding upstream 245651 28254320 ~ 28254981 (-)
G55081 NA non-coding upstream 253406 28262075 ~ 28262656 (-)
G55085 LOC108412740 non-coding upstream 302736 28311405 ~ 28313529 (-)
G54947 NA other downstream 268551 27728711 ~ 27731079 (-)
G54873 NA other downstream 526283 27469218 ~ 27473347 (-)
G54854 dhx37 other downstream 831120 27166686 ~ 27168510 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 1219916 26761132 ~ 26779714 (-)
ccl28 NA other downstream 1423205 26573400 ~ 26576425 (-)
LOC103039900 NA other upstream 18070 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 144752 28153421 ~ 28157449 (-)
LOC111192657 NA other upstream 409064 28417733 ~ 28423955 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other upstream 546058 28554727 ~ 28600510 (-)
kiaa1671 NA other upstream 1735359 29744028 ~ 29840753 (-)

Expression


Co-expression Network