trnak-uuu_1


Basic Information

Item Value
gene id trnak-uuu_1
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25567141 ~ 25567213 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnak-uuu_1
gcccggatggctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnak-uuu_1 True 73 tRNA 0.56 1 25567141 25567213

Neighbor

gene id symbol gene type direction distance location
LOC103035302 NA coding downstream 22614 25541306 ~ 25544527 (-)
LOC103036837 NA coding downstream 26742 25532060 ~ 25540399 (-)
LOC103035606 LOC108441999 coding downstream 46915 25510629 ~ 25520226 (-)
LOC103037139 LOC108442001,LOC108265961,LOC107697601,LOC107712558,LOC105890695 coding downstream 61595 25486562 ~ 25505546 (-)
LOC103046226 znf608 coding downstream 83157 25473885 ~ 25483984 (-)
lrrc2 lrrc2 coding upstream 44909 25612122 ~ 25621265 (-)
efna5 efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629 coding upstream 213216 25780429 ~ 25966065 (-)
fbxl17 fbxl17,LOC107570989 coding upstream 527898 26095111 ~ 26529204 (-)
ubox5 NA coding upstream 1027127 26594340 ~ 26599322 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding upstream 1034250 26601463 ~ 26614549 (-)
trnak-uuu NA non-coding downstream 795 25566274 ~ 25566346 (-)
G54448 NA non-coding downstream 41972 25524104 ~ 25525169 (-)
G54358 snx2 non-coding downstream 220444 25333400 ~ 25346697 (-)
G54360 NA non-coding downstream 223728 25341697 ~ 25343413 (-)
LOC111192641 NA non-coding downstream 275167 25099176 ~ 25291974 (-)
trnak-uuu_2 NA non-coding upstream 180 25567393 ~ 25567465 (-)
trnak-uuu_3 NA non-coding upstream 432 25567645 ~ 25567717 (-)
trnak-uuu_4 NA non-coding upstream 684 25567897 ~ 25567969 (-)
trnak-uuu_5 NA non-coding upstream 936 25568149 ~ 25568221 (-)
trnak-uuu_6 NA non-coding upstream 1347 25568560 ~ 25568632 (-)
fam240a LOC108441996 other downstream 5002 25549350 ~ 25562139 (-)
jcad NA other downstream 569021 24950612 ~ 24998120 (-)
svil NA other downstream 646551 24786251 ~ 24920590 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 1215205 24341400 ~ 24351936 (-)
G53996 NA other downstream 2475166 23091306 ~ 23091975 (-)
LOC103042298 slc35d2 other upstream 991193 26558406 ~ 26569939 (-)
ccl28 NA other upstream 1006187 26573400 ~ 26576425 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 1193919 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 1599473 27166686 ~ 27168510 (-)
G54873 NA other upstream 1902005 27469218 ~ 27473347 (-)

Expression


Co-expression Network