trnak-uuu_34


Basic Information

Item Value
gene id trnak-uuu_34
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25591433 ~ 25591505 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnak-uuu_34
GCCCGgatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnak-uuu_34 True 73 tRNA 0.56 1 25591433 25591505

Neighbor

gene id symbol gene type direction distance location
LOC103035302 NA coding downstream 46906 25541306 ~ 25544527 (-)
LOC103036837 NA coding downstream 51034 25532060 ~ 25540399 (-)
LOC103035606 LOC108441999 coding downstream 71207 25510629 ~ 25520226 (-)
LOC103037139 LOC108442001,LOC108265961,LOC107697601,LOC107712558,LOC105890695 coding downstream 85887 25486562 ~ 25505546 (-)
LOC103046226 znf608 coding downstream 107449 25473885 ~ 25483984 (-)
lrrc2 lrrc2 coding upstream 20617 25612122 ~ 25621265 (-)
efna5 efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629 coding upstream 188924 25780429 ~ 25966065 (-)
fbxl17 fbxl17,LOC107570989 coding upstream 503606 26095111 ~ 26529204 (-)
ubox5 NA coding upstream 1002835 26594340 ~ 26599322 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding upstream 1009958 26601463 ~ 26614549 (-)
trnak-uuu_33 NA non-coding downstream 180 25591181 ~ 25591253 (-)
trnak-uuu_32 NA non-coding downstream 2171 25589190 ~ 25589262 (-)
trnak-uuu_31 NA non-coding downstream 2423 25588938 ~ 25589010 (-)
trnak-uuu_30 NA non-coding downstream 3004 25588357 ~ 25588429 (-)
trnak-uuu_29 NA non-coding downstream 3256 25588105 ~ 25588177 (-)
trnak-uuu_35 NA non-coding upstream 1340 25592845 ~ 25592917 (-)
trnak-uuu_36 NA non-coding upstream 2754 25594259 ~ 25594331 (-)
trnak-uuu_37 NA non-coding upstream 3587 25595092 ~ 25595164 (-)
trnak-uuu_38 NA non-coding upstream 4420 25595925 ~ 25595997 (-)
G54466 LOC103035659,LOC108430319 non-coding upstream 10912 25602417 ~ 25605207 (-)
fam240a LOC108441996 other downstream 29294 25549350 ~ 25562139 (-)
jcad NA other downstream 593313 24950612 ~ 24998120 (-)
svil NA other downstream 670843 24786251 ~ 24920590 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 1239497 24341400 ~ 24351936 (-)
G53996 NA other downstream 2499458 23091306 ~ 23091975 (-)
LOC103042298 slc35d2 other upstream 966901 26558406 ~ 26569939 (-)
ccl28 NA other upstream 981895 26573400 ~ 26576425 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 1169627 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 1575181 27166686 ~ 27168510 (-)
G54873 NA other upstream 1877713 27469218 ~ 27473347 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnak-uuu-127 NA coding NC_048583.1 CM023237.2 19994594 ~ 19994666 (-)
eurasian perch (Perca fluviatilis) trnak-uuu_22 NA coding NC_053131.1 CM020928.1 14939806 ~ 14939878 (-)
striped catfish (Pangasianodon hypophthalmus) trnak-uuu_21 NA coding NC_047622.1 CM018568.1 317582 ~ 317654 (+)
tiger barb (Puntius tetrazona) trnak-uuu_107 NA coding NC_056715.1 CM032084.1 4910050 ~ 4910122 (-)
tiger barb (Puntius tetrazona) trnaa-cgc_14 NA coding NC_056704.1 CM032073.1 13440955 ~ 13441026 (-)
mexican tetra (Astyanax mexicanus) trnak-uuu_21 NA non-coding NC_035902.1 CM008305.1 25581871 ~ 25581943 (-)