trnaw-cca_6


Basic Information

Item Value
gene id trnaw-cca_6
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25571568 ~ 25571639 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnaw-cca_6
GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCGGGgtca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaw-cca_6 True 72 tRNA 0.58 1 25571568 25571639

Neighbor

gene id symbol gene type direction distance location
nudt12 nudt12 coding upstream 39609 25522975 ~ 25531959 (+)
prdm6 prdm6 coding upstream 130358 25398983 ~ 25441210 (+)
snx2 snx2 coding upstream 225469 25323117 ~ 25346099 (+)
sncaip sncaip,LOC103399731 coding upstream 267453 25297056 ~ 25304115 (+)
znf438 NA coding upstream 856335 24641088 ~ 24715233 (+)
LOC103035659 LOC103035659,LOC108430319,LOC108265778,LOC106587031,LOC105014051 coding downstream 30762 25602401 ~ 25612117 (+)
LOC103036292 LOC103036292 coding downstream 53607 25625246 ~ 25633257 (+)
LOC103021869 NA coding downstream 65820 25637459 ~ 25640853 (+)
LOC103035969 LOC103035969,LOC108430321,LOC108265984 coding downstream 70667 25642306 ~ 25651303 (+)
aaed1 aaed1 coding downstream 958669 26530308 ~ 26534076 (+)
trnaw-cca_5 NA non-coding upstream 1014 25570483 ~ 25570554 (+)
trnaw-cca_4 NA non-coding upstream 2351 25569146 ~ 25569217 (+)
trnaw-cca_3 NA non-coding upstream 4602 25566895 ~ 25566966 (+)
trnaw-cca_2 NA non-coding upstream 6255 25565242 ~ 25565313 (+)
trnaw-cca_1 NA non-coding upstream 6836 25564661 ~ 25564732 (+)
trnaw-cca_7 NA non-coding downstream 1263 25572902 ~ 25572973 (+)
trnaw-cca_8 NA non-coding downstream 2094 25573733 ~ 25573804 (+)
trnaw-cca_9 NA non-coding downstream 2674 25574313 ~ 25574384 (+)
trnaw-cca_10 NA non-coding downstream 3254 25574893 ~ 25574964 (+)
trnaw-cca_11 NA non-coding downstream 3834 25575473 ~ 25575544 (+)
srp19 srp19 other upstream 22074 25545992 ~ 25549494 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 462697 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 1280803 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 3649974 21919225 ~ 21921594 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other upstream 3824488 21673574 ~ 21747080 (+)
LOC103040153 cdc14b,LOC108265480 other downstream 965413 26537052 ~ 26551570 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 1391253 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 1448605 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 1461196 27032835 ~ 27034938 (+)
LOC103030972 LOC108430356 other downstream 1639663 27211302 ~ 27222867 (+)

Expression


Co-expression Network