XLOC_000080



Basic Information


Item Value
gene id XLOC_000080
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6956913 ~ 6990027 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00000153
CTAAAAGCTGTTGACGCAGCAGTCAGACGCGGTTCATAATATGTGAGATTAACACCTCCTAAATGCCTTTTGAAACGGAATGCGGTCTGTTCATTTGCGAGGGGCGAAAGTTTAGTTAAATATCAATGTTGAAATGTGAAAAACGCAAAAAAACCAAATCTATTACTGGCCGTGTGGACCAGGTGTGATGTGGACACGACGCGCAACCGGTGCACACGCACTCATTCACGAGCATGACGAGACTTCACGCGGCAGTGATCACTCAAGATAATGCCAGCCGCAAAAGAGGTTATTAAAAAGACAATTAACTGAGCAAAGGGCATCTAACTGAGATTATAATAGAGCATTGAAAACATGATGTTGAAGAAGATGATTGTATGACTAACATCAAACAGCTGAGTTGGCTTGCCAGACACACTCCCTGAATAAGTGTTTGCTGCATCAGCACAGGTTTTCCCTTGAAGCTCCAAAGCCAATGAAAGAGGAATCGCTccattaaatgaacaaatgtgaatGGACCAGTAAATCCCCAGGGAAATGGATGATGAATCGGACAGAAAGGGAAAGGTTCGCCCACACATGAAG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00000153 True 585 lncRNA 0.44 3 6956913 6990027

Neighbor


gene id symbol gene type direction distance location
XLOC_000079 erbb4a coding upstream 31506 6817292 ~ 6925407 (+)
XLOC_000078 CU302223.1 coding upstream 169109 6787690 ~ 6787804 (+)
XLOC_000077 NA coding upstream 195983 6759183 ~ 6760930 (+)
XLOC_000076 NA coding upstream 288574 6665033 ~ 6668339 (+)
XLOC_000075 ube2f coding upstream 292790 6646529 ~ 6664123 (+)
XLOC_000081 CU929161.1 coding downstream 73810 7063837 ~ 7063943 (+)
XLOC_000082 CABZ01075319.1 coding downstream 102246 7092273 ~ 7115914 (+)
XLOC_000083 ERBB4 coding downstream 199829 7189856 ~ 7448795 (+)
XLOC_000084 NA coding downstream 522502 7512529 ~ 7512762 (+)
XLOC_000085 lancl1 coding downstream 527422 7517449 ~ 7554463 (+)
XLOC_000072 NA non-coding upstream 402443 6379878 ~ 6554470 (+)
XLOC_000087 NA non-coding downstream 682094 7672121 ~ 7674229 (+)
XLOC_000097 NA non-coding downstream 1583750 8573777 ~ 8575057 (+)
XLOC_000073 NA non-coding upstream 553690 6398210 ~ 6403223 (+)

Expression



Co-expression Network