CI01000021_06786996_06789224 (C1QTNF7)


Basic Information

Item Value
gene id CI01000021_06786996_06789224
gene name C1QTNF7
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 6786861 ~ 6790962 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000021_06786996_06789224.mRNA
ATATAAAAAGAAAGATGGATTTAACAGCGGCCTTCACCAACCTCCACCACAAAGAGGAGGTATATTCCCTCCCATTTTGAAAGCTGGCTAAATTATTTGGATGACACAAGTCTTAAAACCATCTATTGGGTTGGCATGCAGAGTGGCCCATTGGTGGATTTGCCAGAGATGGGGAGCTACACTTGGAGGGGGTACATCCTTATCTGTGTGCTTAGGTGTGTGAAGGGTTTCTCAAACTCCAAACCAGTGCCTGCGCCCATAATAGAACCAGAGGTAGAGCCCACGCCTGCCATGGACCCAGCGCTGGAATCCACTCCCAGGTCAATCCCAGATTGCCAATTGCCAGGGCTCAGAGGTAGAGTCGGGCCGACAGGAAAACTCGGAGAGCGCGGGGAGAGAGGTTTCATTGGGAAGCGTGGACCTGAGGGTGATCCTGGAGATTTGGGGTCTCCTGGTCCTCCAGGACGTCTTGGACAGAAGGGTGACAAGGGCCAACGTGGCCCTCCGGGAGAACCAGGTATCTGCAGATGTGGAAGTTTGGTTCCCAAATCCGCTTTCTCTGTAGGCATCACCAGTAGCTACCCCACTGAACAAACACCTATCAAGTTCAACAAAGTCCTGTTTAATGAAGGTGGCCACTACAACCCCGAGACTGGAAAATTTATCTGTGCATACCCAGGAATATACTACTTTTCTTATGACATCACTCTGGCCAACAAGCACCTGGCCATTGGGCTGGTCCAGAACGGACAGTACCGGATAAAGACTTTTGATGCCAACACCGGAAACCACGACGTGGCGTCTGGCTCAACCGTGATGTTTCTCAACCCAGAGGATGAGGTATGGCTGGAGATCTTCTACAGGGACCAGAACGGCTTGTTTGCTGACCCTGGCTGGGCTGACAGTCTGTTCTCTGGGTTTTTACTTTATGCAGATACAAACTATATGGATACATTGGCGGAAGACTACAAATAGCAGCACACTAATATACGGTGCTACCTATGGCCTGTCCATCCCTGTCTTTGACCCTGGATTGGGTTGTTCTGTTTTTTCAGCATCTCACGCCATGAACACTGCATTTCCAGACACAGTTTTAATTTATAAAAAGCAGTTACGTAAAAAAAAAAAAAAAAAATCAGTACAAAACTTGTCTCAAGAACCCTGCATTCTGTTCAATTCAGCTGTTTTTGCATGGAAGAACATCTGACTTGCTGGATGTCACCATGTATATTGTTGACACAAAATAGTTTCTGCTGAAAATGATGTTGTTACCGATCATACAAATAAGAATGAGATCCCTTTTTGATACTCTTGTATATACTGATTATTGATCTGTGTGAAAAAGTCAATCACGCAATTATGATCACTTAATGTCACACTTTTTTAACCCATCCTTAATGCTAACGGTTTCAACTGAGCATTTTATATATATATATATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATATATATATATATATAGGGTTGGGGAGTAACGAAATACATGTAACTTAGTTATGTATTTAAAATACAAATTTTGAGTAACTGTATTTTATTACAGTTACATTTTAAATGGGTGGTAATCAAATTACAGTTACATCCGAAAAGTATTTTAGATTACCAAAGATTACTTTGAAGTTTTATGTCATTTATTTCATTTAAACATGAATGTAAACTGTGATGGGCAATTAATGTAAACAGCAATTGGTGATTCTCTGACAGTCTGCAAAAGCATCCTAAGCTACATTTCTACTCCTAAGTTTCATACCCTTGCAGAATATGCAACATTTTAATAATTTTAACAAAATAAGAGAGATCATAAAAATTGCATGTTATTATATAGTACTTTCCTGAATAAGCTATTTCACATAACAGATGTTCACATATAGTGCACAAGACAAAATGACTGAATTTATAAAAATTGCCTCATTCAAAAATTTACATACCCTTGAATCTTAATTGTCCTGTCATTACCTGGATGATCCACGACTGTTTTCATGTTTTGCAATAGTTGTTTGTGAGTCCATGTAATTGTAAAAAAAAAAAAAAAAAAAAAAGGGTAATTGCGACTTTTTATCTCTATGAGTTTAAATCTCGCAATTGCGTTTTATAAAGGTAGATTTGGGAGGCATAAAAAAGAAAAAAAGTTTATCACGCAATCCTGACTTTATAACTTGCAATTGTGAGTTTATATCTCCCAATTCTGATTTATTTTCTTGCAATTCGGACTTTTTTTCATAAAATTGAGTTTATATCTCAGAATTCTGACTTTATAACTCACAACTGCAACTTTATATCACGCAATTCTGAGAAAAAAGTCCGAATTGTGAGATAAAAACTCGCAGTTACCTTTTTTTGTGTTACAAACCTATTAGTATTCCAAAATATTCTAAAGTATTTAGATTAAGTTACAAAACTTGGGTAATCTACAAAATGTACAAAAGTATTGTTTAATTTGCTGACCA
>TU135916
AGTAACTGTATTTTATTACAGTTACATTTTAAATGGGTGGTAATCAAATTACAGTTACATCCGAAAAGTATTTTAGATTACCAAAGATTACTTTGAAGTTTTATGTCATTTATTTCATTTAAACATGAATGTAAACTGTGATGGGCAATTAATGTAAACAGCAATTGGTGATTCTCTGACAGTCTGCAAAAGCATCCTAAGCTACATTTCTACTCCTAAGTTTCATACCCTTGCAGAATATGCAACATTTTAATAATTTTAACAAAATAAGAGAGATCATAAAAATTGCATGTTATTATATAGTACTTTCCTGAATAAGCTATTTCACATAACAGATGTTCACATATAGTGCACAAGACAAAATGACTGAATTTATAAAAATTGCCTCATTCAAAAATTTACATACCCTTGAATCTTAATTGTCCTGTCATTACCTGGATGATCCACGACTGTTTTCATGTTTTGCAATAGTTGTTTGTGAGTCCATGTAATTGTAAAAAAAAAAAAAAAAAAAAAAGGGTAATTGCGACTTTTTATCTCTATGAGTTTAAATCTCGCAATTGCGTTTTATAAAGGTAGATTTGGGAGGCATAAAAAAGAAAAAAAGTTTATCACGCAATCCTGACTTTATAACTTGCAATTGTGAGTTTATATCTCCCAATTCTGATTTATTTTCTTGCAATTCGGACTTTTTTTCATAAAATTGAGTTTATATCTCAGAATTCTGACTTTATAACTCACAACTGCAACTTTATATCACGCAATTCTGAGAAAAAAGTCCGAATTGTGAGATAAAAACTCGCAGTTACCTTTTTTTGTGTTACAAACCTATTAGTATTCCAAAATATTCTAAAGTATTTAGATTAAGTTACAAAACTTGGGTAATCTACAAAATGTACAAAAGTATTGTTTAATTTGCTGACCAATAAATGCATAATGACATTGTTTGGCAGCCAACGCTACATTATTCTTTTTGCTGTTTGACTTCATGTGTCACAAACTGCTCTGACACGGAGGTTGAGGATCCAAATGCAGTTTTATTAGGGTAATCCAGAATCGTATCCAAAAAACAGGCAAATGGTCAAAA

Function

symbol description
c1qtnf7 Predicted to be located in extracellular region.

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000021_06786996_06789224.mRNA False 2551 mRNA 0.37 2 6786861 6790800
TU135916 True 1087 lncRNA 0.30 1 6789876 6790962

Neighbor

gene id symbol gene type direction distance location
CI01000021_06773262_06780081 NA coding upstream 6780 6773262 ~ 6780081 (+)
CI01000021_06746518_06768316 CPEB2 coding upstream 18521 6743219 ~ 6771079 (+)
CI01000021_06427686_06431101 NA coding upstream 355108 6427686 ~ 6431753 (+)
CI01000021_06423446_06426296 NA coding upstream 359253 6423446 ~ 6427608 (+)
CI01000021_06411964_06421511 NA coding upstream 365350 6411964 ~ 6421511 (+)
CI01000021_06798250_06824148 CC2D2A coding downstream 7450 6798250 ~ 6824486 (+)
CI01000021_06906415_06933563 NA coding downstream 115615 6906415 ~ 6934141 (+)
CI01000021_06938981_06939825 NA coding downstream 148021 6938821 ~ 6939825 (+)
CI01000021_06941580_06949099 TCP1.S, TCP1 coding downstream 150780 6941580 ~ 6949099 (+)
G119693 NA non-coding upstream 50483 6736161 ~ 6736378 (+)
G119692 NA non-coding upstream 53165 6733328 ~ 6733696 (+)
G119690 NA non-coding upstream 56137 6730482 ~ 6730724 (+)
G119689 NA non-coding upstream 57048 6729596 ~ 6729813 (+)
G119724 NA non-coding downstream 88952 6879752 ~ 6880618 (+)
G119730 NA non-coding downstream 158673 6949473 ~ 6951481 (+)
G119731 NA non-coding downstream 161927 6952727 ~ 6952936 (+)
G119747 NA non-coding downstream 184987 6975787 ~ 6976016 (+)
G119750 NA non-coding downstream 191711 6982511 ~ 6982714 (+)
CI01000021_04886787_04893309 PLAGL2 other upstream 1897353 4886337 ~ 4893474 (+)
G117493 NA other upstream 2751185 4033000 ~ 4035676 (+)
G117484 NA other upstream 2829109 3956146 ~ 3957752 (+)
G117202 NA other upstream 3458628 3269144 ~ 3328233 (+)
G117237 NA other upstream 3543497 3237854 ~ 3243364 (+)
G119701 NA other downstream 9344 6800144 ~ 6860606 (+)

Expression


Co-expression Network