G119573


Basic Information

Item Value
gene id G119573
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 6458406 ~ 6458691 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU135774
TGCAGGAGCAAACTAACAAACAACCACATAAAACAGACGATACCGGACAATGAAACAAAGGAAACTGAGGTGAAGCCAGTGGGACTGAGGACCAAGGCAGAGCCAATGGGGTGGTGGGTCGAGGGGCAGCCAGAGACCCAGAAGTCCGTGGCAGAGTGACGTCTGACCAAGATGATGCCGGAGGGACGAGGGTGCCCAGTGGAGCCATAAGGGCGACGGTTCCAGGTAGAGCCGAGGGAGGGAAGAAGCCAAGGTGGAGCTGACTGATCGCTGAGCCGAGATGGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU135774 True 286 lncRNA 0.57 1 6458406 6458691

Neighbor

gene id symbol gene type direction distance location
CI01000021_06427686_06431101 NA coding upstream 26653 6427686 ~ 6431753 (+)
CI01000021_06423446_06426296 NA coding upstream 30798 6423446 ~ 6427608 (+)
CI01000021_06411964_06421511 NA coding upstream 36895 6411964 ~ 6421511 (+)
CI01000021_06408474_06411089 NA coding upstream 47317 6408474 ~ 6411089 (+)
CI01000021_06266751_06267607 NA coding upstream 190248 6264966 ~ 6268158 (+)
CI01000021_06746518_06768316 CPEB2 coding downstream 287827 6743219 ~ 6771079 (+)
CI01000021_06773262_06780081 NA coding downstream 314571 6773262 ~ 6780081 (+)
CI01000021_06786996_06789224 C1QTNF7 coding downstream 328170 6786861 ~ 6790962 (+)
CI01000021_06798250_06824148 CC2D2A coding downstream 339559 6798250 ~ 6824486 (+)
CI01000021_06906415_06933563 NA coding downstream 447724 6906415 ~ 6934141 (+)
G119570 NA non-coding upstream 2386 6455768 ~ 6456020 (+)
G119567 NA non-coding upstream 4141 6454041 ~ 6454265 (+)
G119534 NA non-coding upstream 16527 6438967 ~ 6441879 (+)
G119554 NA non-coding upstream 56894 6401151 ~ 6401512 (+)
G119426 NA non-coding upstream 124820 6329280 ~ 6333586 (+)
G119577 NA non-coding downstream 18085 6476776 ~ 6476999 (+)
G119578 NA non-coding downstream 21385 6480076 ~ 6480409 (+)
G119613 NA non-coding downstream 93530 6552221 ~ 6555282 (+)
G119661 NA non-coding downstream 219008 6677699 ~ 6677942 (+)
G119646 NA non-coding downstream 220570 6679261 ~ 6700065 (+)
CI01000021_04886787_04893309 PLAGL2 other upstream 1568898 4886337 ~ 4893474 (+)
G117493 NA other upstream 2422730 4033000 ~ 4035676 (+)
G117484 NA other upstream 2500654 3956146 ~ 3957752 (+)
G117202 NA other upstream 3130173 3269144 ~ 3328233 (+)
G117237 NA other upstream 3215042 3237854 ~ 3243364 (+)
G119701 NA other downstream 341453 6800144 ~ 6860606 (+)

Expression


Co-expression Network