G119730


Basic Information

Item Value
gene id G119730
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 6949473 ~ 6951481 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU135954
AAATAAATACAGTAAGACCAAAACAATCACCCCAGTTATGAATTACCTCCACCTCCTTTCAAGCTGCGAGTGTCTGAGCTGCTGCTTTCCATGCAGCAAAACTGGATGGTGATTTATACCATACTTTACATCATTTTATTATTTTTGTAATTGAGTTTTTCCATGAAAATAGCCTCAGATGCTGACATGGCATTAAATAAATTATACTGAACTTTACATAATTTTATTCTCCAACTTTTAAGCTGTTATTCACAAATAATCTCCCCTTCATTTTATTTTTCTTTTTCTCTCAGAGGTAGCATGAATCACCATCCACTTTTCTTCCATGGAAAATGGGCTGCTCTTCATGAAACTAATAACATTTTTCATATTTGGGTGAACTCTTCAAGAACTTAAACAAAAATCATACTGAACGTCAAGTTGTTTTGCTTTTCAGTAGTTAACTGCCTGGCCTCAGCTGGTGAAATTGGCCTTTTAACATAAACATGGCCTGAACATGACATTACAATGCCTGCAGTCTCAAATTTTGGCAATAAAAACAAATAAATATACAGCATTCAAATTCATCTTGTGAAAAAGGCATTTCCTGTACAGATGCTCCATTTGTGCTACTACTCGCTATGGACTTTCCATTGAGTCATATGAGAAGTTTACATTTAGACCGTCCCAGCAGTCTTGAAGACTTACTGACAAGTTGGATGTAATGAATGTAGTTACTTCCACTTAAAAAAAAAAAGTAACTTCAACCTTTAATTAAGCTTTCTCAGGCCAATGCACACTGACTAGCATCTCCATGGATCCAATGGCATATCTGGGCGTACTTGCTGGGTGTTATTCTGACTGCCACATTATAGTCCTTTTGTATCCCATCGACATCCACCCACTGGTGTCCAGAGAACACACCAATTACCTTCCTCTTCCACTTCCCTTTTCCTGCCTGATCTCGTAGCCTCACATACACACCGGCTCCACTTGATCCCTTCTGTGCGTCACAGTACTGGTACATTAGGTCGTTAGATTCCTCCAAGACCGAACAGAAGCGATAGACCACCTTCCCTAACTGGTCATTATCAAAACCAGAGAAGTGGATTCTTCCAGCTGGGATGTCCTTGACTACAGGAACAACACCTAACTCCATGAACTTCATCTTATGGGGTCGTTTGAGCTCCAGAAGGGCGTAATCATAGTCAGCTGAGACCTCCTCGCCTGCTCTCCTCATCCAACCGGTTGGTACTTGAGTTCGTTTGACGCGTGTCCACCGGAACGCTGGTTGTCTGGACTGGTCTGAATCTGTCTCTCGCCTAAAACGGTTCTTCCTTTTCCTCCTGTGTTCTCTAACTTGTCCTTCAGTGGCTACATCTCCTTCATTTCCCGCTTCACTTTCTCTCCTCTTTTCTCCTCTCCTGCCTCCTCGTTGGCGCCCTCCCCTGCGTTTGGAGCGAAGCTTCATGATACCCACTCGGAGCCTCTTGGTCCCTTTCAAATAGTCTTGGCCACTGTGGACACAGTGGGCGGAAGTCAGTACATGTCTTGGAGAAACCAAGATGCCTGAGCAACCCGTAGAGAGCTTCACTGATGCAGAAAAGGGGTAATTGGTGGTGAAGTGTTTATCTGTGATCACAAAGCGCCCGTCCATCCCGTATACCTGCCGTTTTCTGCGTTTAAGGTGTCCCGTCTTGCAGACAATGGAAGAGGACGTGTTTCTTAATTCAGTGACCCCTTCCAGTTTTATTTTGGTGAAGATGCGTGTTCCATTCTCGTAGATCGTTTCATAAGACAGTAGTCGTTCCAGCTCAGCAGGCCTCGGTTCTGGCAGCTTTCGCTGGCACTCGATCCCACACATCACTCCTGGCTCACTCGAGTCGTCAGCAGTGAATTCCGGGCTTTGAAGCCTCACTGTGCTTTCGTCCAGGATTACTGGGACTTTCATCGGTGTCAAGTGGCAGTCGTCTTCATTGTTTGGGATAGAAGCACCAGTAGAGACCAAAGATACAGCCACAGCCAGTATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU135954 True 2009 lncRNA 0.44 1 6949473 6951481

Neighbor

gene id symbol gene type direction distance location
CI01000021_06941580_06949099 TCP1.S, TCP1 coding upstream 374 6941580 ~ 6949099 (+)
CI01000021_06938981_06939825 NA coding upstream 9648 6938821 ~ 6939825 (+)
CI01000021_06906415_06933563 NA coding upstream 15332 6906415 ~ 6934141 (+)
CI01000021_06798250_06824148 CC2D2A coding upstream 124987 6798250 ~ 6824486 (+)
CI01000021_06786996_06789224 C1QTNF7 coding upstream 158673 6786861 ~ 6790962 (+)
G119724 NA non-coding upstream 68855 6879752 ~ 6880618 (+)
CI01000021_06746518_06768316 CPEB2 non-coding upstream 178394 6743219 ~ 6771079 (+)
G119693 NA non-coding upstream 213095 6736161 ~ 6736378 (+)
G119692 NA non-coding upstream 215777 6733328 ~ 6733696 (+)
G119731 NA non-coding downstream 1246 6952727 ~ 6952936 (+)
G119747 NA non-coding downstream 24306 6975787 ~ 6976016 (+)
G119750 NA non-coding downstream 31030 6982511 ~ 6982714 (+)
G119701 NA other upstream 88867 6800144 ~ 6860606 (+)
CI01000021_04886787_04893309 PLAGL2 other upstream 2059965 4886337 ~ 4893474 (+)
G117493 NA other upstream 2913797 4033000 ~ 4035676 (+)
G117484 NA other upstream 2991721 3956146 ~ 3957752 (+)
G117202 NA other upstream 3621240 3269144 ~ 3328233 (+)

Expression


Co-expression Network