CI01000024_00913269_00915063 (POU3F3, POU3F3A, POU3F3B)


Basic Information

Item Value
gene id CI01000024_00913269_00915063
gene name POU3F3, POU3F3A, POU3F3B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 912852 ~ 915565 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_00913269_00915063.mRNA
AGGAACGGAGCAAGTGAAATCGCTGCGGCTAAATAACAAAAGAATTGAGGAAGAACCACGTTTAATATTTTTCCACTCGGTAACGGAACATACGTTTGGACTTATTATTTTTTAAGGGCAACTTATTCAAGCGCCAGAACTTTCTTGCGGGACAAAGTTTTTGAAACAATTTTTAATCTTTCTTTTTGTTTTTCTTTGCTTTTAAATAGAACGTATAGATTGAAGGACTGTTCGACTTTCGAGGGGTTTTCAACGCTGACATAAAACTGGAATTTATCGTTTTCATATGTTCGAAATATATGAATGCACAAAATATTCAAGAGACGGATTTCGTCTTCTCGCCTACAGTATCGTTCTCTTTGCTTTTTGTTGATGGTGTTTGCCAAAACACAAGCCAGACTTTTAAAGTTTGAATAATTCATGAGATATAATTTGCCTGCATTAAAAAAGTTTCTGCAAAAGGGAGGGGGTGACCAGCGAACATATTCATAAGGTTAGCGGAATGGCCACAGCGGCTTCCAACCCTTATCTACCCAGCAGTAGTATATTATCGTCCGGCTCGATCGTGCACTCGGACTCCGGGGGTGGGATGCAGCAGGGCAGTGCTGCGGTAACCTCAGTGTCCGGTGGGTACAGAGGAGACCCAACGGTTAAAATGGTACAAAGTGATTTTATGCAGGGCGCGATGGCAGCGAGCAACGGGGGACACATGCTGAGCCACGCTCACCAGTGGGTGACGTCCTTGCCTCACGCCGCAGCGGCGGCTGCAGCTGCCGCAGTTGCCGCAGCTGAAGCCGGATCGCCGTGGTCGTCTAGTCCCGTTGGAATGACAGGCAGCCCGCAACAGCAGCAGGACGTGAAAAATAACTCGGGGAGAGACGATTTGCACTCTGGGACTGCGCTGCATCACAGGCCCCCACATTTAGGTCCCCACCAGACTCACGCGGGCGCCTGGGGTAGCACAACCGCTGCCCACATCCCGTCGCTAACCGGGAGCCAACAGCAGCAGCAGTCCCTCATATACTCGCAGCCCGGCGGCTTCACGGTGAACGGCATGCTCAGTCCGCCGGGCAGCCAAAGCCTAGTACACCCGGGGCTGGACACGCCGACGTCGGATGACTTAGAGCACTTTGCCAAGCAGTTCAAACAGCGCCGGATCAAGCTGGGCTTCACGCAAGCGGACGTGGGCTTGGCGTTGGGCACTCTGTACGGGAACGTCTTCTCGCAGACCACGATCTGTCGCTTCGAAGCCCTCCAGCTCAGCTTTAAGAACATGTGCAAGCTGAAGCCGTTGCTTAACAAATGGCTGGAGGAAGCGGACTCTTCCACGGGCAGTCCCACCAGCATCGACAAGATCGCGGCTCAGGGCAGGAAGCGCAAGAAGCGCACCTCCATCGAAGTGAGCGTCAAAGGTGCGTTGGAGAGTCACTTCTTGAAATGTCCCAAGCCTTCGGCCCAAGAGATAACCAGCCTAGCGGACAACCTGCAGCTGGAGAAAGAGGTGGTCAGAGTTTGGTTTTGCAACCGGAGACAGAAGGAGAAAAGGATGACGCCCCCAGGAGTGCCGCAGACGCCGGAGGATGTGTATTCTCAGGTCGGCAATGTGAGTGCAGATACACCGCCCCCCTCCATGGACTGCAAACGAATGTTCAGGACATTTTTTAGTAGATTACTTAAAAGATGCAAGTTTAACTGGGCCGAGCGAACCGGGCGACCAGAGGGTGACAACTACAAGTTCGTTCCACCAGGTAATTTTGGCGCATTAACTTCAACTGAAAAATACAAGAAATTAGAAATGAACAACAAAATCTTTGACCCCCCCTTCCCTGTTACACCAATGTCTTGTTTGAGAGGCAAAAGACGCAGGCAATTGTGTATGTTGTTATGGGACATTAAACCTCAAACAAAGGGATGAAATTCAACCGAAACAATGCGAAGAACAGTGGCATCCACGAAGCTTCCATCCAACTTGGCAGAGAAGACTGCATGGTTTTGTTATTATCCAAAAATATGGAATGGATTTTTTTCTGGCCTTCCAATCCTTACAAAAACAACAAAAGACTGCCCTCAGTTTCTGATCTCCAAGATCTTTTTGAAATTGTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGTAAAGACACTGAATCTTACGTGGATTTTGAGGACAAAATGAAATCAAAGATGACTTTTGAAAAGACTGATTATTCCGCAGCTGCACCTCTTTGAAAATCTTCTGCGCGAACATCCGTTGCCAAGTGGGCCAGAGCTGGTGCTGTGGATGTTTTCATGTGCTGCCATTTCCAAGCAGTATTCTTTGGTAGGTTTTAATAAA

Function

symbol description
pou3f3a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in central nervous system; neural tube; neurons; pharyngeal arch; and pronephric duct. Orthologous to human POU3F3 (POU class 3 homeobox 3).
pou3f3b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system; neural rod; otic vesicle; pronephric duct; and spinal cord neural tube. Human ortholog(s) of this gene implicated in X-linked deafness 2. Orthologous to several human genes including POU3F3 (POU class 3 homeobox 3).
pou3f3 Enables protein homodimerization activity. Involved in positive regulation of transcription, DNA-templated. Located in nucleoplasm.

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09365 POU3F, OTF; POU domain transcription factor, class 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_00913269_00915063.mRNA True 2332 mRNA 0.48 3 912852 915565

Neighbor

gene id symbol gene type direction distance location
CI01000024_00871953_00893156 MRPS9 coding downstream 19696 871689 ~ 893156 (-)
CI01000024_00825386_00837898 NA coding downstream 74302 824968 ~ 838550 (-)
CI01000024_00766380_00783144 NCK2B, NCK2 coding downstream 128596 765081 ~ 784256 (-)
CI01000024_00758857_00762162 NA coding downstream 149073 758598 ~ 763779 (-)
CI01000024_00747057_00748859 ECRG4B coding downstream 163993 746731 ~ 748859 (-)
CI01000024_00931895_00936667 NA coding upstream 16177 931742 ~ 936831 (-)
CI01000024_00955186_00965837 NA coding upstream 39152 954717 ~ 966070 (-)
CI01000024_01258292_01261764 NA coding upstream 341714 1257279 ~ 1262033 (-)
CI01000024_01405425_01412752 PTPRNB, PTPRN coding upstream 489510 1405075 ~ 1412752 (-)
CI01000024_01423879_01438170 DNPEP coding upstream 508126 1423691 ~ 1438170 (-)
G121423 NA non-coding downstream 6908 874427 ~ 905944 (-)
G121415 NA non-coding downstream 64390 845994 ~ 848462 (-)
G121412 NA non-coding downstream 70833 838695 ~ 842019 (-)
G121399 NA non-coding downstream 255105 657431 ~ 657747 (-)
G121398 NA non-coding downstream 256242 656400 ~ 656610 (-)
G122859 NA non-coding upstream 465863 1381428 ~ 1385325 (-)
G122860 NA non-coding upstream 529021 1444586 ~ 1452856 (-)
G122923 NA non-coding upstream 576286 1491851 ~ 1492211 (-)
G122926 NA non-coding upstream 586010 1501575 ~ 1505218 (-)
G122981 NA non-coding upstream 697271 1612836 ~ 1613067 (-)
G123233 NA other upstream 1631895 2547460 ~ 2555036 (-)
CI01000024_03938368_03941795 NA other upstream 3020477 3938315 ~ 3941924 (-)
G125457 NA other upstream 6441672 7357237 ~ 7358104 (-)
G125798 NA other upstream 7060102 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014334 LOC107748535,LOC108247996,LOC104928562,LOC103473625 coding CM030128.1 CM030128.1 9914125 ~ 9916789 (+)