CI01000024_01747187_01758168 (INO80DB)


Basic Information

Item Value
gene id CI01000024_01747187_01758168
gene name INO80DB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 1747041 ~ 1758168 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_01747187_01758168.mRNA
ATGACTGGCAATAATGTTATCACCGCACGTGAGATTGCACTGAATTTGAAGTTGGTGATGTCATTCCAGGCATGGATGAGACGCAGTTCCAGCCCTGGGATGTATGAAGGCAAACACATCCACTACTCGGAGGTGGACCACAAGCCTCTGTGTTCATATAGTCCAAAGCTTTGCAAGCAGCGCAGGCTCAATGGTTATGCTTTCTGCATCCGCCATGTGCTTGAGGACCGGACCGCTCCCTTCAGGCAGTGCGAATATGTAGCCAAGTACAATAGCCAGCGCTGCACCAACCCAATTCCCAAGGCTCATGACCGCAAGTATTGTAATAGTCACCTTCAGGTTATGGGTGTCCTCCCCAAGAAGGAGCGAAAGAAGAAACAAGATACCATTGAGTCTTTGGCCCTCAAAATTACCGTTCCATCCCTGGCTCTGAAAGCTCACAACGGTCTTGAGCTTTTACCTCCATCCCCACCACCCTCTCTGGCTTGTCTAGATCCCTTTGCCTTTTGCAGGGGAGAAAAAATGTTAAAATCAAGTGGCACATTCCTGAAGAAACCCCAAGAAAGCCAAGCTCTGAACCATAAGCAGAAACAGCAAGATCACAGTGTGGATCCAGCCTTCCCAAACCATCTCAGAACATCTTCTCTTTCTTCAACCCTTCCACATCCTTGCCTCCCTCCTCCGCAGACCGGAAGAACCACACAAACACCCATAGTTCCCTCCTCGCCTCACGCTGCAACCCTGCAAACCACGGCTGTTCGTTCAGGTTCATTATTCAAAACCTCATCGACACTTCCGGACAGCCATCAGGGCTCAATAGACACATCTCCAACTGATAACAAAATTAAAATGGACCTTAATCATGCTTTTGATAAAAAGGTTGCCCCTGCAGCTTCGGGGATGGCACCAAGCCGTGATGACATACATAGACGATTAATAAAAATGCGCTCAGTTGCTATGCAGCAACAAACTCCATGTTTGCAGAAGTTCCATAGATTGATGGACCAACACAAGGGGAGGTACCAAGACCTGAATCCACAATTAGAATGTGTTCTAGGGCTTGACTTGTCAGAAGACAGTGAAGAGGAAGATGGAGACTTGGGGAAACTAGTGTCATATCAGTGCCAGAGACTACAAGAGAAGCACTTTGAGGAAAGTGCCAGCAGTTCCCGTGCTGAGCGTTTGGCAGGCTTCTGCTCATACCTGAGACAAAAACACACGCACCTTTGCAGGGAGCAGAGGGGCTTCAGGAGAGAGAAGAGATCCCAGCATGCCCTTCGTAAAGCCCTGCTGCAGGCAGCAAGAGCGGAACCTCACCACACTGCACAGCTTATTCAGGAACAACATAAAGAGACCTCCACACCCTCCAGCACTGCAGTACCATTGGCTGGAGATGACTCAGGTTTGTGTTTGGCTATCGTGAAAGATATACTTCAGAACCGTTCACAGCAGCTGTTCTCAAGCTGCACCGCTCGCTTTGCAGACGGAGCTCAGTGTTCCATCCCTGTCTTTGACATCACGCACCAGACGCCACTTTGTGATGAGCACGCCAAGAAAATGGACAATTTCCTTCGAGGTGATATCAGCCGGAGAACGTACCACCACCACCAGCAGATTCAGCGGCACAGGCCACTGAAGAAAGCCAAGCCTCCAGCACTCAGTAAGAAGCATAAGAAGAAAGGCAAGCGAGGAGCACCAAAGCGCCCTCAGAAGCCCATTCCTCCCGCGCTGCCCCAGGGTAACCTGGGAATGCCTTCCATTTTGTGCCTGCCCACTCAGCCTTCTGGCATAAGGAGCCCTTTAACTCCTGATTTAAGTGCAGATGAATTTCCAGATGACATCACCAATGACATCAGTGACATTCCACATGACCTAGAGTTGAATCAGGAGGATTTCTCAGATGTTCTCCCGCGACTCCCGGATGACCTGCAGGACTTTGATCTTTTCGAAGGTAAGAACAGTGAGCTGTTGCCCACCTCTGAGGAAGCCGAGGAATTGGTTCGCGTTCTGCAGGCCATGAGCTCGTACCCAGAATCCCTTGCATGTCTAAGCGGAATGGCTGAGCTTGGTCCCGTAGAAGGGGTAGATTGTCGTAGCATGCCAGGGGGAGTCGTGGATCTACTGAGTGTGCGGCTGTCTGCTGAGACTCTTTCCAGCCTGGAGCTGGACCCCAGTCTGCTCCCCACCTCTGAAGATGCTTTTCCCCCTTCACCTCCATCACCACAGCCCCCTCTGACTCCTCCATCCTCTGTGGGGCATCTCACAGACAGCGCATACCCACAGAGACAACCTCATCTCCTAGCTAAGATGGATACCTCCAAAGCAGATCTGAGCGATCTGCCCCTTGGCAAGGACGAGGACATCTCTCATGGCTCCTGGGGCGTTCTCGCCCTTCCCCTCAGCGACTCCTCACAGTTTCACAGCCTTATTGCCTCGGACGGCCTGCTGATGTCCACAGCCCTCTCAACACCAATGACCCCCGTGCCCTCAGCCCCCTGTCAGCCCAGTTCGGCCCTCTCGGCTTTGCATCAGAGCAGCCAAACTGTCCCCGCCACTCGCTCCACACCCTCACCCTCATCACCACCGTCCCAAACCAAGCACCTTCTCCCCCCACTGTTCAATCACTGTGGGATCCCAGCAGACTTACAGCCGCATCATAGTACACCGGCGCCCCCAATGGACCAGGCCTGAACTGCAGGCAGAACCAATTATCACAGTGTTCAGGGAACATGTTGCAGGTGATTTTTCTTTTTTTTCCAAATGTCAGGGTCATTGTGTCTGTCTCCTCAGTCCTCTGCATCTTTTTCCCTCACAAAGAAAGAACATCAAGCAATAAA

Function

symbol description
ino80db Predicted to enable 4 iron, 4 sulfur cluster binding activity; NADH dehydrogenase (ubiquinone) activity; and metal ion binding activity. Predicted to act upstream of or within ATP synthesis coupled electron transport; DNA recombination; and DNA repair. Predicted to be located in mitochondrial inner membrane. Predicted to be active in nucleus. Orthologous to human INO80D (INO80 complex subunit D).

GO:

id name namespace
GO:0006310 DNA recombination biological_process

KEGG:

id description
K11668 INO80D; INO80 complex subunit D

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_01747187_01758168.mRNA True 2837 mRNA 0.52 10 1747041 1758168

Neighbor

gene id symbol gene type direction distance location
CI01000024_01630975_01637097 GMPPA, GMPAA, GMPPAA, GMPPAB coding downstream 109894 1630948 ~ 1637147 (-)
CI01000024_01555879_01590626 ASIC4B coding downstream 155736 1555879 ~ 1591305 (-)
CI01000024_01521726_01530789 WNT6A coding downstream 216252 1521522 ~ 1530789 (-)
CI01000024_01517836_01518771 CDK5R2A, CDK5R2 coding downstream 227835 1516519 ~ 1519206 (-)
CI01000024_01455583_01465466 TMEM198, TMEM198B coding downstream 281464 1455395 ~ 1465577 (-)
CI01000024_01758848_01767950 NDUFS1 coding upstream 406 1758574 ~ 1767950 (-)
CI01000024_01813434_01822004 DYTN coding upstream 55238 1813406 ~ 1823279 (-)
CI01000024_01830050_01834086 NA coding upstream 70501 1828669 ~ 1834086 (-)
CI01000024_01837143_01844791 NA coding upstream 78738 1836906 ~ 1844791 (-)
CI01000024_01847790_01854114 CATIP coding upstream 89612 1847780 ~ 1854114 (-)
G123003 NA non-coding downstream 70851 1669034 ~ 1676190 (-)
G122981 NA non-coding downstream 133974 1612836 ~ 1613067 (-)
G122926 NA non-coding downstream 241823 1501575 ~ 1505218 (-)
G122923 NA non-coding downstream 254830 1491851 ~ 1492211 (-)
G122860 NA non-coding downstream 294185 1444586 ~ 1452856 (-)
G122843 NA non-coding upstream 10893 1769061 ~ 1770250 (-)
G123023 NA non-coding upstream 25024 1783192 ~ 1793132 (-)
G123025 NA non-coding upstream 58867 1817035 ~ 1817249 (-)
G123026 NA non-coding upstream 79584 1837752 ~ 1838161 (-)
CI01000024_01854695_01861662 PNKD non-coding upstream 103872 1854365 ~ 1862458 (-)
CI01000024_00825386_00837898 NA other downstream 920190 824968 ~ 838550 (-)
G123233 NA other upstream 789292 2547460 ~ 2555036 (-)
CI01000024_03938368_03941795 NA other upstream 2177874 3938315 ~ 3941924 (-)
G125457 NA other upstream 5599069 7357237 ~ 7358104 (-)
G125798 NA other upstream 6217499 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031914 ndufs1 coding NC_007117.7 CM002890.2 13206516 ~ 13254851 (+)