G121376


Basic Information

Item Value
gene id G121376
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 625239 ~ 644693 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU137839
AAACATCTTGGATGACATGGGGGTGAGTAAATTATCAGGAAATTTTAATTCTGAAGTGAACTAATCCTTTAACAATCACGCACAAAGAGAGGGAAATCTGATCATTCTATGACACAGACTGTATAATTGTTGAAATTAAGTGTTATTTTGTGTTTTCCACAAAACGAATATAGGAAGAGATCTGTTTGTGCATGTTCTGTTATGTTTGGATTTATGGGAGTTTATGTTAAACTGCCGTTTTGGGGTCACCATTGTGGTGAAGAGTATAGCGTGTGGTTAGGATCGAGGATGGGCCAATAGACATTTAAGACACAAAGAAAGTCCGAAAGTGAGTTTTGACTGAGTGTAGATCTGTGCTGGCTCTGTTTCAGATGGTTCAGTCCGATTTGGTGAACTGGTTTAACCAGTTCACTAAAAAGAACCTGTTTGTGAACCAGACATCACTAAATCAACAATCCAATCGATTTCCTATGGACAAAATCAAGTCCTGCACTAGTTCGAGAAGCTGTTTCACTCAGATATACCGTACGTAACAATAGGGAGGAAAAGACTTTCACAACTTCTGTTTCATGCTGACTTAAAGACTATATGAACTGCATGCAGCAGTTTAATAATGTACCTCTCTCTGTAACTTGCGTTTCTCCACTTTCAGTTCATCTTCCACTTTCTCTGCAGCCTCAGCAGACGTCTTATAGCGGCCCACCTGACCCTCCAGCCGAATTATGTTTTGTTCAAGTGCAGTAACTTCTTGCTCAGACTTGACAAGCTTGAATTTCAGGTCACTGATCTGCCTGTTAGCATCCCTCTGCAGATCTAGGATATGAGGATCCAGACCGTTCTGTAGGTCATCCTCATCCGTGCTTCCTGTTTCTTCTGTCCCATTCTTCTGTTTCTGCTCTGCAGTAGCTTTAAGCTTCCGCACTTGGTCGAGCAAACTCTCTCTCTCTTCCACCAGCTTCCTTAATCTGATCTCTGAAAGATGCAAACAAAAACATGTACAGCACATGAACCTCATACAGAGTCGGACAATGGTACATACACAACGAGACGATGTGGGCACTAAAATAATTTATTTTGTAGCACAAAGTATACAAACTGGGACTGTCATTTTAACATTTTACAATGAATTATACAATGACGTGCATTTAGCATGACCAAAAATGCATGACTTGATTGCAAAATAGATTGCTGGGGTGATCAGAAATAAGNAAACAAACAAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU137839 True 1223 lncRNA 0.40 5 625239 644693

Neighbor

gene id symbol gene type direction distance location
CI01000024_00479343_00529567 IQCA1 coding downstream 95672 479296 ~ 529567 (-)
CI01000024_00452459_00455193 GBX2 coding downstream 169220 452208 ~ 456019 (-)
CI01000024_00227784_00237812 NA coding downstream 386858 226961 ~ 238381 (-)
CI01000024_00171018_00176868 NA coding downstream 448371 170990 ~ 176868 (-)
CI01000024_00029438_00038223 PCBP3 coding downstream 585265 28975 ~ 39974 (-)
CI01000024_00697714_00714666 TMTOPS2B, TMTOPS2A coding upstream 52683 697376 ~ 715313 (-)
CI01000024_00747057_00748859 ECRG4B coding upstream 102038 746731 ~ 748859 (-)
CI01000024_00758857_00762162 NA coding upstream 113905 758598 ~ 763779 (-)
CI01000024_00766380_00783144 NCK2B, NCK2 coding upstream 120388 765081 ~ 784256 (-)
CI01000024_00825386_00837898 NA coding upstream 180275 824968 ~ 838550 (-)
G121365 NA non-coding downstream 18422 606330 ~ 606817 (-)
G121361 NA non-coding downstream 34095 590879 ~ 591144 (-)
G121360 NA non-coding downstream 37830 587200 ~ 587409 (-)
G121353 NA non-coding downstream 64238 560740 ~ 561001 (-)
G121280 NA non-coding downstream 204950 401716 ~ 420289 (-)
G121397 NA non-coding upstream 10573 655266 ~ 655500 (-)
G121398 NA non-coding upstream 11707 656400 ~ 656610 (-)
G121399 NA non-coding upstream 12738 657431 ~ 657747 (-)
G121412 NA non-coding upstream 194002 838695 ~ 842019 (-)
G121415 NA non-coding upstream 201301 845994 ~ 848462 (-)
G123233 NA other upstream 1902767 2547460 ~ 2555036 (-)
CI01000024_03938368_03941795 NA other upstream 3291349 3938315 ~ 3941924 (-)
G125457 NA other upstream 6712544 7357237 ~ 7358104 (-)
G125798 NA other upstream 7330974 7975667 ~ 7976047 (-)

Expression


Co-expression Network