Gene
RNA
| Item | Value |
|---|---|
| gene id | G121415 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000024 |
| NCBI id | null |
| chromosome length | 8644187 |
| location | 845994 ~ 848462 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU137888 | True | 1283 | lncRNA | 0.40 | 3 | 845994 | 848462 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000024_00825386_00837898 | NA | coding | downstream | 7444 | 824968 ~ 838550 (-) |
| CI01000024_00766380_00783144 | NCK2B, NCK2 | coding | downstream | 61738 | 765081 ~ 784256 (-) |
| CI01000024_00758857_00762162 | NA | coding | downstream | 82215 | 758598 ~ 763779 (-) |
| CI01000024_00747057_00748859 | ECRG4B | coding | downstream | 97135 | 746731 ~ 748859 (-) |
| CI01000024_00697714_00714666 | TMTOPS2B, TMTOPS2A | coding | downstream | 130681 | 697376 ~ 715313 (-) |
| CI01000024_00871953_00893156 | MRPS9 | coding | upstream | 23227 | 871689 ~ 893156 (-) |
| CI01000024_00913269_00915063 | POU3F3, POU3F3A, POU3F3B | coding | upstream | 64390 | 912852 ~ 915565 (-) |
| CI01000024_00931895_00936667 | NA | coding | upstream | 83280 | 931742 ~ 936831 (-) |
| CI01000024_00955186_00965837 | NA | coding | upstream | 106255 | 954717 ~ 966070 (-) |
| CI01000024_01258292_01261764 | NA | coding | upstream | 408817 | 1257279 ~ 1262033 (-) |
| G121412 | NA | non-coding | downstream | 3975 | 838695 ~ 842019 (-) |
| G121399 | NA | non-coding | downstream | 188247 | 657431 ~ 657747 (-) |
| G121398 | NA | non-coding | downstream | 189384 | 656400 ~ 656610 (-) |
| G121397 | NA | non-coding | downstream | 190494 | 655266 ~ 655500 (-) |
| G121376 | NA | non-coding | downstream | 201301 | 625239 ~ 644693 (-) |
| G121423 | NA | non-coding | upstream | 25965 | 874427 ~ 905944 (-) |
| G122859 | NA | non-coding | upstream | 532966 | 1381428 ~ 1385325 (-) |
| G122860 | NA | non-coding | upstream | 596124 | 1444586 ~ 1452856 (-) |
| G122923 | NA | non-coding | upstream | 643389 | 1491851 ~ 1492211 (-) |
| G122926 | NA | non-coding | upstream | 653113 | 1501575 ~ 1505218 (-) |
| G123233 | NA | other | upstream | 1698998 | 2547460 ~ 2555036 (-) |
| CI01000024_03938368_03941795 | NA | other | upstream | 3087580 | 3938315 ~ 3941924 (-) |
| G125457 | NA | other | upstream | 6508775 | 7357237 ~ 7358104 (-) |
| G125798 | NA | other | upstream | 7127205 | 7975667 ~ 7976047 (-) |
