G121423


Basic Information

Item Value
gene id G121423
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 874427 ~ 905944 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU137896
AATAATTAAACAATAAACATTTATTAAATTGCTTATTAATAAATGTTCACCTTTTGATTATTATTGTTGCCTCTAGTAATTATGTGTCTGATTTGTAGTTTCCAGCCTATTTTGGGTTCATTTTAAGCCAGACATATAGTCATTTTTAAACAATAGTTGAGTTAAATAAAACTACCCAGCATGTTGGACAAACATTTAAAACAACCCATTTTCTGGGTTTGTCCATTTTTAACCCAACTTGGGTTGTTTTTAACCCTGCATTTTTTAGAGTACAGGCTGTTAAAATATTAGTTTTTTAGATTATTTGTTTTTGCGAACCCCATAAAAGCCTTTTTCCAAGTCTACTGATGTGTAGACTTGATTTCCAGCTCTCAGATTGTAACTCTGTAATCAAATGTGTGTAGGCCTGATAATAATTCTGAATCTTATTGTGATTGTTTTTACGATAACTGCATTTATTGTGCACTTTAAATTGCTATTCAAATAAGGGAATTTATGAGAATATCTCTTTTATGTGTCTCTGGTGCATAAAGAGGACAAAAATATATTACTATTGCATAATATAATTCACAAGACAAACATTAATCAATTACTATAATATTGTGGTGGGCTGTGAACACATTGTGAATTGAAAGTGGGTCCAAGAGTAATATATTCAAGTTTAATATTTAAATATTAATTATGTAATTGAACCCATGTGCAGTATTAGTTTGCAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU137896 True 718 lncRNA 0.29 2 874427 905944

Neighbor

gene id symbol gene type direction distance location
CI01000024_00825386_00837898 NA coding downstream 35877 824968 ~ 838550 (-)
CI01000024_00766380_00783144 NCK2B, NCK2 coding downstream 90171 765081 ~ 784256 (-)
CI01000024_00758857_00762162 NA coding downstream 110648 758598 ~ 763779 (-)
CI01000024_00747057_00748859 ECRG4B coding downstream 125568 746731 ~ 748859 (-)
CI01000024_00697714_00714666 TMTOPS2B, TMTOPS2A coding downstream 159114 697376 ~ 715313 (-)
CI01000024_00913269_00915063 POU3F3, POU3F3A, POU3F3B coding upstream 6908 912852 ~ 915565 (-)
CI01000024_00931895_00936667 NA coding upstream 25798 931742 ~ 936831 (-)
CI01000024_00955186_00965837 NA coding upstream 48773 954717 ~ 966070 (-)
CI01000024_01258292_01261764 NA coding upstream 351335 1257279 ~ 1262033 (-)
CI01000024_01405425_01412752 PTPRNB, PTPRN coding upstream 499131 1405075 ~ 1412752 (-)
G121415 NA non-coding downstream 25965 845994 ~ 848462 (-)
G121412 NA non-coding downstream 32408 838695 ~ 842019 (-)
G121399 NA non-coding downstream 216680 657431 ~ 657747 (-)
G121398 NA non-coding downstream 217817 656400 ~ 656610 (-)
G121397 NA non-coding downstream 218927 655266 ~ 655500 (-)
G122859 NA non-coding upstream 475484 1381428 ~ 1385325 (-)
G122860 NA non-coding upstream 538642 1444586 ~ 1452856 (-)
G122923 NA non-coding upstream 585907 1491851 ~ 1492211 (-)
G122926 NA non-coding upstream 595631 1501575 ~ 1505218 (-)
G122981 NA non-coding upstream 706892 1612836 ~ 1613067 (-)
G123233 NA other upstream 1641516 2547460 ~ 2555036 (-)
CI01000024_03938368_03941795 NA other upstream 3030098 3938315 ~ 3941924 (-)
G125457 NA other upstream 6451293 7357237 ~ 7358104 (-)
G125798 NA other upstream 7069723 7975667 ~ 7976047 (-)

Expression


Co-expression Network