Gene
RNA
| Item | Value |
|---|---|
| gene id | G122981 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000024 |
| NCBI id | null |
| chromosome length | 8644187 |
| location | 1612836 ~ 1613067 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU139643 | True | 232 | lncRNA | 0.31 | 1 | 1612836 | 1613067 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000024_01555879_01590626 | ASIC4B | coding | downstream | 21531 | 1555879 ~ 1591305 (-) |
| CI01000024_01521726_01530789 | WNT6A | coding | downstream | 82047 | 1521522 ~ 1530789 (-) |
| CI01000024_01517836_01518771 | CDK5R2A, CDK5R2 | coding | downstream | 93630 | 1516519 ~ 1519206 (-) |
| CI01000024_01455583_01465466 | TMEM198, TMEM198B | coding | downstream | 147259 | 1455395 ~ 1465577 (-) |
| CI01000024_01423879_01438170 | DNPEP | coding | downstream | 174666 | 1423691 ~ 1438170 (-) |
| CI01000024_01630975_01637097 | GMPPA, GMPAA, GMPPAA, GMPPAB | coding | upstream | 17881 | 1630948 ~ 1637147 (-) |
| CI01000024_01747187_01758168 | INO80DB | coding | upstream | 133974 | 1747041 ~ 1758168 (-) |
| CI01000024_01758848_01767950 | NDUFS1 | coding | upstream | 145507 | 1758574 ~ 1767950 (-) |
| CI01000024_01813434_01822004 | DYTN | coding | upstream | 200339 | 1813406 ~ 1823279 (-) |
| CI01000024_01830050_01834086 | NA | coding | upstream | 215602 | 1828669 ~ 1834086 (-) |
| G122926 | NA | non-coding | downstream | 107618 | 1501575 ~ 1505218 (-) |
| G122923 | NA | non-coding | downstream | 120625 | 1491851 ~ 1492211 (-) |
| G122860 | NA | non-coding | downstream | 159980 | 1444586 ~ 1452856 (-) |
| G122859 | NA | non-coding | downstream | 227511 | 1381428 ~ 1385325 (-) |
| G121423 | NA | non-coding | downstream | 706892 | 874427 ~ 905944 (-) |
| G122864 | NA | non-coding | upstream | 45686 | 1658753 ~ 1788836 (-) |
| G123003 | NA | non-coding | upstream | 55967 | 1669034 ~ 1676190 (-) |
| G122843 | NA | non-coding | upstream | 155994 | 1769061 ~ 1770250 (-) |
| G123023 | NA | non-coding | upstream | 170125 | 1783192 ~ 1793132 (-) |
| G123025 | NA | non-coding | upstream | 203968 | 1817035 ~ 1817249 (-) |
| CI01000024_00825386_00837898 | NA | other | downstream | 785985 | 824968 ~ 838550 (-) |
| G123233 | NA | other | upstream | 934393 | 2547460 ~ 2555036 (-) |
| CI01000024_03938368_03941795 | NA | other | upstream | 2322975 | 3938315 ~ 3941924 (-) |
| G125457 | NA | other | upstream | 5744170 | 7357237 ~ 7358104 (-) |
| G125798 | NA | other | upstream | 6362600 | 7975667 ~ 7976047 (-) |
