G125386


Basic Information

Item Value
gene id G125386
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 7284938 ~ 7286936 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU142356
TTGGCTACATTCTCTACAATCGCAGCAGCACTTTAGAGACAGATCACCATATGTTGAGCTGAAAACTGCTTCTGGGGTTGAAAGAGTATTTAGAGAGTGGAAACAACAAAAGCTGAGATTCTTCCCCTGAAAACAGACTCTGGAAGCTTTGACAGTTTGTTCGCGGTCCGGTTCACGTCATTCGGAGATGCTGACCTGACTCAGGCTCCGGGATCAGCGAGGGTTGCTAAGCAACATGACAGCACTGGGTCTGGGCATAAAGGGGTTAAACGATCAAGGGTGGGGTCCGGCCCACACACGCATACGTACGTCAGACCCTCAGTCTCACAACACACCTCATTCAGTTTTTTTTTTTTCATGCTTTTCCTGGTAAATCAAATTTATATTTGGTCTGATTCTTAATCTGAATAAATCATAGAACTAAAAGCAACATCAGGTAGCAGCAAGGTGATGCTGCATCAGACAACAAAAGCAACAAACAAACCTGCAAACAAAATATGAAAACCTGCTCAGGGTTGGATTCATTAATATATACGCATATGTCGTTTGAGAGTTTCTATAGGAGGTCTACTGAAATGACTTTTTACAGCGTCTCCTCCTACATGCAGGATTCTCAGGTGAATCTCACCAAACTGGTCAATAACATGTCCAGGTCATTTTCCACCCCAAAATCTAAATAAATAAATATGACTTAAAAGAATCCTATTTCATCATTTTGACAAAATTTATGCCAATTAAATGTATGAAAAAGACATTGTATGCATACATCATATATATATATATATATATAAACTCTTTATAACAGTAAAACTCAAGATCATAATAGTGTCTCAATCTTTATTTGTAAATCTGTGCCAAAATCTGTCCAAATGGTCCTGAAACAGCCTTAATTTCCTTAATCTAAAAGTTCTTTTTCGCTTGGTTTTGGGGTGAAATATGACCTGGACATTCTTTGTGAGATCCATCCATCCACATTTTGCAAATATTGCGCCCATTTAAACAAACTGACAATGTTCATACATGTTACTTTAAAGTGAAACAGACAGTATTTTGTAACACACACACACACACACGCACACACATCTTGCAATCTGTGGCCAACATACATGTATGTTATGAACAGCCAACATATAACGCTGTGGCGTAAAACATCCATTCACAGGTGCACGCGCACAAAAATTCTTACAGACACATTTGTCACATTAAAACACTCGTTCATCTATTTCCACTCACACTACAATTAATTGCCTCTAAATTTCACACTTACACAAAACAAAACACCCCTTTACTGAGGCGTAGCTCAGGGAGGATATCAACAATAAGCTAAAACGTTAGCGCAACCCTCCCAAATCTACTCCACAAAATGCCTTGGGTAAAAACAAATGTCAATTTTCAAATGGTTCTAGCTCTGACTGACATCTGGATCCACACAGGAAATGACATCGGCCATTCCTGCCCCAATATCAATGGCAGTCACTGTGGCCGGTGTGGGCGTGTCCTACAGCCTGTCAGCTGATATATAGCTCCTCCCCCTTCCTGTCCACCCCGAGGTGTTGAAGGGAGGGAAATCACCATCAGAACCATCAATCATGATCGATCAGCCATTGAGATCAGTAGGAGATTATTCCTGAAGAGGCAGGGCTTGCGGGAGTGGCCTGCAAGTTCCCTGACGAATTGGACCGCCTCATGTGAGGAAGAAGGTACGAGTCACTGCCCAGCTGGTGGACGTCAAAGCGGTCCTCCTTCCTGTAAGCCAGACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU142356 True 1760 lncRNA 0.42 2 7284938 7286936

Neighbor

gene id symbol gene type direction distance location
CI01000024_07239312_07251354 DC1I2, DYNC1I2, DYNC1I2B coding downstream 33073 7237542 ~ 7251865 (-)
CI01000024_07131727_07169937 SEMA5BB coding downstream 115001 7131013 ~ 7169937 (-)
CI01000024_07117698_07119483 NA coding downstream 164935 7117116 ~ 7120003 (-)
CI01000024_06987928_07001260 CEP170L coding downstream 283580 6987456 ~ 7001358 (-)
CI01000024_06944906_06955771 NA coding downstream 329167 6943962 ~ 6955771 (-)
CI01000024_07293038_07298458 GORASP2 coding upstream 5913 7292849 ~ 7298458 (-)
CI01000024_07300290_07303945 NA coding upstream 12407 7299343 ~ 7305514 (-)
CI01000024_07308822_07327683 GAD1B, GAD1, GAD1A coding upstream 19449 7306385 ~ 7327683 (-)
CI01000024_07340241_07341456 NA coding upstream 52838 7339774 ~ 7341516 (-)
CI01000024_07402113_07409179 SSB coding upstream 114224 7401160 ~ 7409795 (-)
G125389 NA non-coding downstream 154934 7128822 ~ 7130004 (-)
G125385 NA non-coding downstream 170052 7113143 ~ 7114886 (-)
G125425 NA non-coding downstream 183018 7101685 ~ 7101920 (-)
G125379 NA non-coding downstream 242246 7042399 ~ 7042692 (-)
G125374 NA non-coding downstream 253825 7029690 ~ 7031113 (-)
G125459 NA non-coding upstream 90098 7377034 ~ 7377263 (-)
G125476 NA non-coding upstream 150015 7436951 ~ 7437358 (-)
G125523 NA non-coding upstream 225942 7512878 ~ 7513128 (-)
G125716 NA non-coding upstream 226714 7513650 ~ 7513971 (-)
G125725 NA non-coding upstream 227368 7514304 ~ 7545425 (-)
CI01000024_03938368_03941795 NA other downstream 3343014 3938315 ~ 3941924 (-)
G123233 NA other downstream 4729902 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 6458087 824968 ~ 838550 (-)
G125457 NA other upstream 70301 7357237 ~ 7358104 (-)
G125798 NA other upstream 688731 7975667 ~ 7976047 (-)

Expression


Co-expression Network