XLOC_000085 (lancl1)


Basic Information

Item Value
gene id XLOC_000085
gene name lancl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7517449 ~ 7554463 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000159
GTGTCCTGAGATCAGACGAGAAGAATTCAACAGTGCAGCACTCGAACGATCTCTTCAAAATGTCTGAACAACGAGCCTTGAAGAATCCTTATCCAGATTACACTGGGCTGGGATGTGCACAAGACTTGTTTGACATGCAGGGAAATTTGACCCAGCATTTCGCCACCAGTATAAGCAGCAAGATCAGTGAGCTTTTGGCCATTTTGGAGAACGGGCTGAAGAATGCAGACCCCAGAGACTGTACTGGGTACACTGGCTGGGCAGGAATTGCCCTGCTGTACCTGCACCTCCACAGTGTGTTTGGAGACCCGACTTTCCTCCAGAGGGCTCTGGATTACGTCAACCGCAGCCTGAGGAGTTTAACGCAGCGCTGGGTGACCTTCCTGTGTGGAGATGCAGGACCGCTGGCCATCGCAGCCGTGGTTTATCATCGCCTCCAGAAACACCAGGAGTCTGATGAGTGTCTGAACAGGTCTGATGTTGTCTGGTGGTTTTAGTTCAAATTGTTCattttgatatacagttgaagtcaatataATTCGCCctcctatgattttttttctttcattttcaaatatttcccaaatgatgtttaacagagcagggaatttttcacagtatttcttataatattttttcttcttcataaaatcttatttgtttattttggtttgaaTAAAAGCTGTTCTTACATTTTTAAgataacattttaaggtcaatattattagccctcttaagcaatatttcgatagatagtctacagatcaaagcatcattataataacttgcctaatcaccctaacttgCCCAGTTAACGTAATTATCCttcttaaacctttaaatgtcactttaagctgatcaCTAGTATCTTAAAATATATGTAGTAAAGCATTATggactgtcgtcatggcaaagataaaataaatcatttattagaa
>TCONS_00000160
CTGAGATCAGACGAGAAGAATTCAACAGTGCAGCACTCGAACGATCTCTTCAAAATGTCTGAACAACGAGCCTTGAAGAATCCTTATCCAGATTACACTGGGCTGGGATGTGCACAAGACTTGTTTGACATGCAGGGAAATTTGACCCAGCATTTCGCCACCAGTATAAGCAGCAAGATCAGTGAGCTTTTGGCCATTTTGGAGAACGGGCTGAAGAATGCAGACCCCAGAGACTGTACTGGGTACACTGGCTGGGCAGGAATTGCCCTGCTGTACCTGCACCTCCACAGTGTGTTTGGAGACCCGACTTTCCTCCAGAGGGCTCTGGATTACGTCAACCGCAGCCTGAGGAGTTTAACGCAGCGCTGGGTGACCTTCCTGTGTGGAGATGCAGGACCGCTGGCCATCGCAGCCGTGGTTTATCATCGCCTCCAGAAACACCAGGAGTCTGATGAGTGTCTGAACAGGCTGTTGCAGCTGCAGCCATCAGTAGTGCAGGGGAAAGGAAGGCTGCCTGATGAGCTGCTGTACGGCAGAACGGGCTACCTTTACTCCCTCATTTTCGTCAACCAGCAGTTCCAGCAGGAGAAGATCCCCTTTCAGTACATTCAGCAGATCTGTGATGCTATACTGGAGTCGGGACAGATTCTTTCTCAGAGGAACAAGATCCAGGACCAAAGCCCTCTGATGTATGAGTGGTATCAAGAGGAGTATGTGGGCGCTGCTCACGGTCTGTCAGGGATCTACTATTACCTGATGCAGCCTGGTCTTGTTGCTGGTCAGGACAGGGTTTTCAGTCTGGTCAAACCCAGCGTCAATTATGTGTGTCAGCTGAAGTTTCCATCAGGAAATTATGCACCGTGTGTCGGAGACGCTCGAGATCTTCTGGTGCACTGGTGTCACGGCTCTCCTGGAGTTATATACATGTTAATTCAGGCTTTCAAGGTGTTTGGCGTGCGGCAGTATTTGGAGGACGCTTTGCAGTGTGGTGAGGTGATCTGGCAGAGGGGTTTGCTAAAGAAGGGTTATGGACTCTGCCATGGAGCTGCTGGAAACGCTTACGGCTTCCTGGCCCTTTACAAGATCACGCAGGATCCCAAACACCTCTACAGAGCCTGCATGTTTGCAGACTGGTGCATGAATTATGGGAGACACGGCTGCCGGACTCCAGATACACCGTTCTCACTGTTTGAAGGGATGGCGGGGACAATTTATTTCCTGGCTGACCTTCTGCAACCAGCTAGAGCCAAGTTCCCCTGTTTTGAGGTGTAAAGGTTGTTCGAGGATGTATGCAGAGTTTAGCCTAAGCTTCTCCAAGCTGGATGGAGTGTCCTCTGATGGTGGATTAGTACTGTCTCGCTCTGCATGTGCGTCTGCATGCCTCGGCCCTGTCTCAATTCATGCTAAATCTTACGAGAGGTGTGTATATGTGGagaacagtgcttttttttctccccccatTAGAAGAAGGTGGATGGGTTCTTGACTATATAGATGAGGGTTAATTTGAAACTataaagttaaagggatagttgacacAAAAATAACAATTCTGACATTAACTCACTTGGTTCAATACCTTTTTGAGTTGTTTTCTTCTGGTTAACTTAAAAGATGATATCCTAAGAAAATGCTGGTCGCTgccacccattgacttccataagatTTTTTGAGTGCCGAcaatcaacattcttcaaaatatcttcttttgtgttgagcagaagaaagaaactcataaaggtttacaacaacatgttcatttttgggtgaactatccctttaagcttttaaaataaatgtttaatatgtttaacagattGCACTGATTTTTGTTGTACATTTGTTGATGTTCTTGAACATGTGTTTGGTATTATATATTACTAAGACTCattgaacatttattattttgatgtatCTGTTAGGATAGGATTTTTTTTAGGTTTAGAATATtgtgatatgacaaaaaaaagtgtaactGCGTTTTGAAACTAATAATTGCATTCATATGCTTTGAGTAGGATTAATGCTTTGCTTTCTGtattaaaatgagtttatttTGATAATACTAATAGTGGTATCAGAGGATGTGCtgcaaaattgtttgttttttaaaagatggTAGTAAAATATGTTAGCATTTGCCTTTTACAGTataatttgtacattttcatCTGCAcagcaataaaaataacaaaaca
>TCONS_00000161
ACAGAGCCTGCATGGTGAGTCCTACcacaaaattacatatttaaaatatctgtaggggaagacacggtggctcagtggttagcactgtcacctcacggcAAGCAGGTCTGGGAAATGTATGCATATTCTGTGTGACCAATGGAGGATGTTATAAATCACTGTGCTGGCAGGAGGGGATCCGTCATTGCCTGTTGTGTGAACAGAGGCATGATGGGATTTGATGTCTTCTCATCTGCAGTTTGCAGACTGGTGCATGAATTATGGGAGACACGGCTGCCGGACTCCAGATACACCGTTCTCACTGTTTGAAGGGATGGCGGGGACAATTTATTTCCTGGCTGACCTTCTGCAACCAGCTAGAGCCAAGTTCCCCTGTTTTGAGGTGTAAAGGTTGTTCGAGGATGTATGCAGAGTTTAGCCTAAGCTTCTCCAAGCTGGATGGAGTGTCCTCTGATGGTGGATTAGTACTGTCTCGCTCTGCATGTGCGTCTGCATGCCTCGGCCCTGTCTCAATTCATGCTAAATCTTACGAGAGGTGTGTATATGTGGagaacagtgcttttttttctccccccatTAGAAGAAGGTGGATGGGTTCTTGACTATATAGATGAGGGTTAATTTGAAACTataaagttaaagggatagttgacacAAAAATAACAATTCTGACATTAACTCACTTGGTTCAATACCTTTTTGAGTTGTTTTCTTCTGGTTAACTTAAAAGATGATATCCTAAGAAAATGCTGGTCGCTgccacccattgacttccataagatTTTTTGAGTGCCGAcaatcaacattcttcaaaatatcttcttttgtgttgagcagaagaaagaaactcataaaggtttacaacaacatgttcatttttgggtgaactatccctttaagcttttaaaataaatgtttaatatgtttaacagattGCACTGATTTTTGTTGTACATTTGTTGATGTTCTTGAACATGTGTTTGGTATTATATATTACTAAGACTCattgaacatttattattttgatgtatCTGTTAGGATAGGATTTTTTTTAGGTTTAGAATATtgtgatatgacaaaaaaaagtgtaactGCGTTTTGAAACTAATAATTGCATTCATATGCTTTGAGTAGGATTAATGCTTTGCTTTCTGtattaaaatgagtttatttTGATAATACTAATAGTGGTATCAGAGGATGTGCtgcaaaattgtttgttttttaaaagatggTAGTAAAATATGTTAGCATTTGCCTTTTACAGTataatttgtacattttcatCTGCAcagcaataaaaataacaaaaca
>TCONS_00000162
AGTTAATATTCATTTTAGAGAACAGGAAAGCTCAGGATGGTTAAAAAAGTCAATATTTGATGGAATAAGCCTGATATTCAGTCACgacaaatgaaaatattgtttatttggcCCAATTATCGtcttaagaataaaaaaaataaatgcttcaaaataaattaataaatgaaaatatcagGTTTGACCATCTGAAAGCATCATTTACTGTATGTTTGTTCTGAAGGGATGGCGGGGACAATTTATTTCCTGGCTGACCTTCTGCAACCAGCTAGAGCCAAGTTCCCCTGTTTTGAGGTGTAAAGGTTGTTCGAGGATGTATGCAGAGTTTAGCCTAAGCTTCTCCAAGCTGGATGGAGTGTCCTCTGATGGTGGATTAGTACTGTCTCGCTCTGCATGTGCGTCTGCATGCCTCGGCCCTGTCTCAATTCATGCTAAATCTTACGAGAGGTGTGTATATGTGGagaacagtgcttttttttctccccccatTAGAAGAAGGTGGATGGGTTCTTGACTATATAGATGAGGGTTAATTTGAAACTataaagttaaagggatagttgacacAAAAATAACAATTCTGACATTAACTCACTTGGTTCAATACCTTTTTGAGTTGTTTTCTTCTGGTTAACTTAAAAGATGATATCCTAAGAAAATGCTGGTCGCTgccacccattgacttccataagatTTTTTGAGTGCCGAcaatcaacattcttcaaaatatcttcttttgtgttgagcagaagaaagaaactcataaaggtttacaacaacatgttcatttttgggtgaactatccctttaagcttttaaaataaatgtttaatatgtttaacagattGCACTGATTTTTGTTGTACATTTGTTGATGTTCTTGAACATGTGTTTGGTATTATATATTACTAAGACTCattgaacatttattattttgatgtatCTGTTAGGATAGGATTTTTTTTAGGTTTAGAATATtgtgatatgacaaaaaaaagtgtaactGCGTTTTGAAACTAATAATTGCATTCATATGCTTTGAGTAGGATTAATGCTTTGCTTTCTGtattaaaatgagtttatttTGATAATACTAATAGTGGTATCAGAGGATGTGCtgcaaaattgtttgttttttaaaagatggTAGTAAAATATGTTAGCATTTGCCTTTTACAGTataatttgtacattttcatCTGCAcagcaataaaaataacaaaaca
>TCONS_00000163
GTCTCAATTCATGCTAAATCTTACGAGAGGAATCTTGTGCTCCAGACTGTCATGATATCGCTCAGGAcgtggattaaagTGCTGGTAgacattgacttgcattatatgaATCGCCAAGGACCGCGGGTTCAGCTAAAAACCTTGTATGTTCTAGTCACCCACCTCTtgaatggcctgaggGCTGGAGAATTCACTGCTGACCAGATTGAGGACTTCAAAGAGGCCTTTGGTCTCTTTGACAGAGTTGGTGACAGCAAGGTTGCCTACAACCAGGTTGCCGATATCATGCGTGCCCTGGGTCAGAACCCCACCAACA
>TCONS_00000164
ATTAATTTGATTTTGTCTGTATGTGTTTTTGACTCTCGTAGTGCTGGTAgacattgacttgcattatatgaATCGCCAAGGACCGCGGGTTCAGCTAAAAACCTTGTATGTTCTAGTCACCCACCTCTtgaatggcctgaggGCTGGAGAATTCACTGCTGACCAGATTGAGGACTTCAAAGAGGCCTTTGGTCTCTTTGACAGAGTTGGTGACAGCAAGGTTGCCTACAACCAGGTTGCCGATATCATGCGTGCCCTGGGTCAGAACCCCACCAACAAGGATGTGAAGAAAATCCTGGGTGACCCATCTGCTGACGACATGGCCAACAAAAGAATTGACTTTGAGGCTTTCCTGCCAATGCTCAAGACTGTTGACGCCAACCAGAAAGGTACCTATGATGACTACGTTGAGGGTCTGCGCGTCTTCGACAAAGA
>TCONS_00000165
GAAAGTTAAAGAAGCTTTGCGCATCACAGGCTCCGCCCCCGTGACATCATTAGCATAGCATAAATAAGAAGGGGCTGCTCCATGTTTCAGGACCACTCTCCTGGGACTCCGGCTTCTTGACTTCTGCCCCTCCGCTCCTGCGCCCCAAAACTACATCATGGCTGGAGAATTCACTGCTGACCAGATTGAGGACTTCAAAGAGGCCTTTGGTCTCTTTGACAGAGTTGGTGACAGCAAGGTTGCCTACAACCAGGTTGCCGATATCATGCGTGCCCTGGGTCAGAACCCCACCAACAAGGATGTGAAGAAAATCCTGGGTGACCCATCTGCTGACGACATGGCCAACAAAAGAATTGACTTTGAGGCTTTCCTGCCAATGCTCAAGACTGTTGACGCCAACCAGAAAGGTACCTATGATGACTACGTTGAGGGTCTGCGCGTCTTCGACAAAGAGGGCAACGGCACAGTGATGGGCGCTGAGCTGCGCATTGTGCTGTCAACACTGGGTGAGAAGATGAGCGAGCCAGAGATTGACGCTCTCATGCAGGGACAGGAGGATGAGAACGGCATGGTCCACTATGAGGCTTTCGTCAAGAACATCATGTCCGTGTAAGAAGTCATCCGTCTAGGGAGTGGTGAAGAAGGCTGAATTACATCTGCAGACCCCACGGTGTCAGGACATCCATTTTGTTTTGAAGACCAATCACTAAAAAGGACTATGGGATGTCACTTCTAAACcattctgttctttttttttttttttcctcactcACCCATCGTTTTGGAAGTCACATCGTCCTCATGCAGTCAACCCACCTCGCCTTCTTGTTCCGACCGGTGGCGTCTGTCCACAGTGGGATGGAGACCGGGGAAGAAGGAAAAGGCCACTCATGAAGTGAGGGTTGCTTTCCTTTTTCTCCGCCCGTCCAGGGTTTCGACAGCACCTCTTAGCTGTGTGTTAAAGGCACATGACGTTACTGTGGCCAGGCTGCCAATATTCCCCCATCCCAATTTTCACACAGTCATTTCACAATAAACTTTTTTCCAAAAGTACACTGAGTTTTTCCTTTGTATGCTACCGGACCATCTGTTCAAATAAGAGATGGTGGCTAGGCATGTGATGGTACGGCAATGCTAGATCAGTGGCAAAAGTTCAAA
>TCONS_00000166
ATGTCAGACGAGTGTGTTTAAGTGGGACTGatttactgttgtctttctggCAGGCTGGAGAATTCACTGCTGACCAGATTGAGGACTTCAAAGAGGCCTTTGGTCTCTTTGACAGAGTTGGTGACAGCAAGGTTGCCTACAACCAGGTTGCCGATATCATGCGTGCCCTGGGTCAGAACCCCACCAACAAGGATGTGAAGAAAATCCTGGGTGACCCATCTGCTGACGACATGGCCAACAAAAGAATTGACTTTGAGGCTTTCCTGCCAATGCTCAAGACTGTTGACGCCAACCAGAAAGGTACCTATGATGACTACGTTGAGGGTCTGCGCGTCTTCGACAAAGAGGGCAACGGCACAGTGATGGGCGCTGAGCTGCGCATTGTGCTGTCAACACTGGGTGAGAAGATGAGCGAGCCAGAGATTGACGCTCTCATGCAGGGACAGGAGGATGAGAACGGCATGGTCCACTATGAGGCTTTCGTCAAGAACATCATGTCCGTGTAAGAAGTCATCCGTCTAGGGAGTGGTGAAGAAGGCTGAATTACATCTGCAGACCCCACGGTGTCAGGACATCCATTTTGTTTTGAAGACCAATCACTAAAAAGGACTATGGGATGTCACTTCTAAACcattctgttctttttttttttttttcctcactcACCCATCGTTTTGGAAGTCACATCGTCCTCATGCAGTCAACCCACCTCGCCTTCTTGTTCCGACCGGTGGCGTCTGTCCACAGTGGGATGGAGACCGGGGAAGAAGGAAAAGGCCACTCATGAAGTGAGGGTTGCTTTC

Function

symbol description
lancl1 Predicted to enable glutathione binding activity; glutathione transferase activity; and zinc ion binding activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in cytoplasm and membrane. Predicted to be active in plasma membrane. Orthologous to human LANCL1 (LanC like 1).

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0048468 cell development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0044057 regulation of system process biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0030424 axon cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0005886 plasma membrane cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0044297 cell body cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0016020 membrane cellular_component
GO:0150034 distal axon cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043295 glutathione binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005523 tropomyosin binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0030172 troponin C binding molecular_function
GO:0031013 troponin I binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0004364 glutathione transferase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko00480 Glutathione metabolism

ZFIN:

id description
ZDB-GENE-000322-6 Predicted to enable calcium ion binding activity. Is expressed in musculature system; pectoral fin; and somite. Orthologous to human MYL1 (myosin light chain 1).
ZDB-GENE-040924-1 Predicted to enable glutathione binding activity; glutathione transferase activity; and zinc ion binding activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in cytoplasm and membrane. Predicted to be active in plasma membrane. Orthologous to human LANCL1 (LanC like 1).

Ensembl:

ensembl_id ENSDARG00000013741 ENSDARG00000017441

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000159 False 938 lncRNA 0.40 4 7517449 7523930
TCONS_00000160 False 2198 mRNA 0.44 11 7517454 7539716
TCONS_00000161 False 1314 lncRNA 0.38 3 7529853 7539716
TCONS_00000162 False 1226 lncRNA 0.33 2 7538408 7539716
TCONS_00000163 False 316 mRNA 0.48 5 7538909 7550654
TCONS_00000164 False 435 mRNA 0.48 4 7540978 7550899
TCONS_00000165 False 1158 mRNA 0.49 6 7546259 7554463
TCONS_00000166 True 803 lncRNA 0.50 5 7546683 7554215

Neighbor

gene id symbol gene type direction distance location
XLOC_000084 NA coding upstream 4687 7512529 ~ 7512762 (+)
XLOC_000083 ERBB4 coding upstream 68654 7189856 ~ 7448795 (+)
XLOC_000082 CABZ01075319.1 coding upstream 401535 7092273 ~ 7115914 (+)
XLOC_000081 CU929161.1 coding upstream 453506 7063837 ~ 7063943 (+)
XLOC_000080 NA coding upstream 527422 6956913 ~ 6990027 (+)
XLOC_000086 pcnp coding downstream 2502 7556965 ~ 7561222 (+)
XLOC_000087 NA coding downstream 117658 7672121 ~ 7674229 (+)
XLOC_000088 en1b coding downstream 124865 7679328 ~ 7683372 (+)
XLOC_000089 CR855320.1 coding downstream 401567 7956030 ~ 7961696 (+)
XLOC_000090 CR855320.2 coding downstream 433589 7988052 ~ 7989314 (+)
XLOC_000078 CU302223.1 non-coding upstream 729645 6787690 ~ 6787804 (+)
XLOC_000097 NA non-coding downstream 1019314 8573777 ~ 8575057 (+)
XLOC_000098 AL928650.2 non-coding downstream 1020844 8575307 ~ 8577274 (+)
XLOC_000100 NA non-coding downstream 1032767 8587230 ~ 8590636 (+)
XLOC_000105 NA non-coding downstream 1396411 8950874 ~ 8965939 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G133260 NA non-coding NC_047602.1 CM018548.1 15299184 ~ 15299387 (+)