Gene
RNA
| Item | Value |
|---|---|
| gene id | G138514 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 1661885 ~ 1663849 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU157373 | True | 1190 | lncRNA | 0.50 | 4 | 1661885 | 1663849 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_01572250_01574108 | NA | coding | upstream | 87475 | 1571893 ~ 1574410 (+) |
| CI01000027_01546280_01571152 | NTRK1 | coding | upstream | 90665 | 1545743 ~ 1571220 (+) |
| CI01000027_01543335_01543974 | NA | coding | upstream | 117656 | 1543335 ~ 1544229 (+) |
| CI01000027_01519267_01519711 | AFP4, APOA2 | coding | upstream | 142109 | 1519267 ~ 1519776 (+) |
| CI01000027_01413155_01416305 | NA | coding | upstream | 244227 | 1413101 ~ 1417658 (+) |
| CI01000027_01767031_01767683 | NA | coding | downstream | 102758 | 1766607 ~ 1767863 (+) |
| CI01000027_01811625_01827803 | RGL2 | coding | downstream | 145908 | 1804199 ~ 1828182 (+) |
| CI01000027_01843365_01850501 | FCGR2A | coding | downstream | 179516 | 1843365 ~ 1850501 (+) |
| CI01000027_01850735_01853042 | NA | coding | downstream | 186886 | 1850735 ~ 1853513 (+) |
| CI01000027_01865502_01875022 | HPN | coding | downstream | 201653 | 1865502 ~ 1877374 (+) |
| G138508 | NA | non-coding | upstream | 14436 | 1632824 ~ 1647449 (+) |
| G138494 | NA | non-coding | upstream | 65417 | 1593275 ~ 1596468 (+) |
| G138491 | NA | non-coding | upstream | 79552 | 1582033 ~ 1582333 (+) |
| G138475 | NA | non-coding | upstream | 128463 | 1532970 ~ 1533422 (+) |
| G138474 | NA | non-coding | upstream | 131959 | 1529721 ~ 1529926 (+) |
| G138515 | NA | non-coding | downstream | 1442 | 1664408 ~ 1676860 (+) |
| G138519 | NA | non-coding | downstream | 9787 | 1673636 ~ 1704490 (+) |
| G138541 | NA | non-coding | downstream | 76306 | 1740155 ~ 1749656 (+) |
| G138545 | NA | non-coding | downstream | 79207 | 1743056 ~ 1743838 (+) |
| G138573 | NA | non-coding | downstream | 89357 | 1753206 ~ 1756788 (+) |
| G138436 | NA | other | upstream | 154069 | 1506961 ~ 1507816 (+) |
| G138290 | NA | other | upstream | 662704 | 995970 ~ 999181 (+) |
| G138247 | NA | other | upstream | 792310 | 855388 ~ 893121 (+) |
| G138238 | NA | other | upstream | 830202 | 829774 ~ 831683 (+) |
| CI01000027_00391159_00499309 | CSMD3 | other | upstream | 1233209 | 390683 ~ 499760 (+) |
| G138915 | NA | other | downstream | 1820538 | 3484387 ~ 3486647 (+) |
| G138953 | NA | other | downstream | 1838223 | 3502072 ~ 3520065 (+) |
| G140436 | NA | other | downstream | 3073549 | 4737398 ~ 4774262 (+) |
| G140440 | NA | other | downstream | 3116568 | 4780417 ~ 4785660 (+) |
