XLOC_000086 (pcnp)


Basic Information

Item Value
gene id XLOC_000086
gene name pcnp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7556965 ~ 7561222 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000167
CTCTCCGGTATCCGTATGTGCCTAAAATAGAGTCCTGCGATGGCGAATGAGAAGTACAGCAGCGAAGGCCCCTCTCAAGAAGGAGGACCGGAAGAGAAGGGAAGCAGTGTGAAAACTAAGACTGTCTCTTCCAGCAAGGCATCAGGAGACAGTCTGCGAAAGCGGCCTGCTCGTGAGATCGACCCAGAAGATGAGTCCAAAAGCACATCAGCTCCCCCTAAAATGTTCAAGTCAGGGTTTAGCATGACAGCAAAGAAACCTATGGCCATCTCTATCAAGCTGGGagcaaatAAACCTAAAGAGCCTCCCCCTGCCATACCTCCCAAGAAATCTGGACTTGCATCTGTTTTTAATGAGGACGATGATAGCGAGCCTGAAGAAATGCCACCTGAGGCAAAGATGAGGATGAAGAATATTGGCAGAGAAACGCCCACATCAGCTGGCCCCAATTCCTTCAACAAAGGAAAGCAGGGATTCTCAGACCATCAAAAACTGTGGGAGAGGAAGCTTAAATCCCACACAGATCAGTAGTGTCTGCTTGCTTTTTGgcactgatttttattttttgtttttgtttgatgaACATTGTACAGATGTATATATGTAATGAATGTTTACGCTAAAACCATCTTTTTCGCCATGCTATGGTTAAAAAATGCCTTCCTGTGTAGAGTGCAAACATAGAAAATTAGCATAATCTTTATCACTGTACAATATGACATGTGCCACACCAGCCTGTTATCATTTACAGCTTAGTTGTTATACAGAAAAGGAATGTGGTGGTGCAGTCATTTAGGATTGTTTAAGATTCATTCAtagcaaggaaaaaaaaaagtctatgaagtaaataataaataggaGATGTGGCATCCATTTTAAGAATGTTTTCCCTCATTCATCTAGTTGGTGTGTTTGTCAGGTTGTGAAAGCagaattaaattatttcattttcaaatttaatttgcTCACCTTCATGGAATTTACAAACTTGTATTT
>TCONS_00000168
CTCTCCGGTATCCGTATGTGCCTAAAATAGAGTCCTGCGATGGCGAATGAGAAGTACAGCAGCGAAGGCCCCTCTCAAGAAGGAGCAGGACCGGAAGAGAAGGGAAGCAGTGTGAAAACTAAGACTGTCTCTTCCAGCAAGGCATCAGGAGACAGTCTGCGAAAGCGGCCTGCTCGTGAGATCGACCCAGAAGATGAGTCCAAAAGCACATCAGCTCCCCCTAAAATGTTCAAGTCAGGGTTTAGCATGACAGCAAAGAAACCTATGGCCATCTCTATCAAGCTGGGagcaaatAAACCTAAAGAGCCTCCCCCTGCCATACCTCCCAAGAAATCTGGACTTGCATCTGTTTTTAATGAGGACGATGATAGCGAGCCTGAAGAAATGCCACCTGAGGCAAAGATGAGGATGAAGAATATTGGCAGAGAAACGCCCACATCAGCTGGCCCCAATTCCTTCAACAAAGGAAAGCAGGGATTCTCAGACCATCAAAAACTGTGGGAGAGGAAGCTTAAATCCCACACAGATCAGTAGTGTCTGCTTGCTTTTTGgcactgatttttattttttgtttttgtttgatgaACATTGTACAGATGTATATATGTAATGAATGTTTACGCTAAAACCATCTTTTTCGCCATGCTATGGTTAAAAAATGCCTTCCTGTGTAGAGTGCAAACATAGAAAATTAGCATAATCTTTATCACTGTACAATATGACATGTGCCACACCAGCCTGTTATCATTTACAGCTTAGTTGTTATACAGAAAAGGAATGTGGTGGTGCAGTCATTTAGGATTGTTTAAGATTCATTCAtagcaaggaaaaaaaaaagtctatgaagtaaataataaataggaGATGTGGCATCCATTTTAAGAATGTTTTCCCTCATTCATCTAGTTGGTGTGTTTGTCAGGTTGTGAAAGCagaattaaattatttcattttcaaatttaatttgcTCACCTTCATGGAATTTACAAACTTGTATTTtgtggaaaagaaaaaaattatacttgTAGGGTTTtcctttttgttcttttttgttaCTGTGTTAAATTAAAGGAAAACAGAAACAACA
>TCONS_00000169
CGTATGTGCCTAAAATAGAGTCCTGCGATGGCGAATGAGAAGTACAGCAGCGAAGGCCCCTCTCAAGAAGGAGGTCCTCCTGGCATCCCTCATCTTTCAGCAGGACCGGAAGAGAAGGGAAGCAGTGTGAAAACTAAGACTGTCTCTTCCAGCAAGGCATCAGGAGACAGTCTGCGAAAGCGGCCTGCTCGTGAGATCGACCCAGAAGATGAGTCCAAAAGCACATCAGCTCCCCCTAAAATGTTCAAGTCAGGGTTTAGCATGACAGCAAAGAAACCTATGGCCATCTCTATCAAGCTGGGagcaaatAAACCTAAAGAGCCTCCCCCTGCCATACCTCCCAAGAAATCTGGACTTGCATCTGTTTTTAATGAGGACGATGATAGCGAGCCTGAAGAAATGCCACCTGAGGCAAAGATGAGGATGAAGAATATTGGCAGAGAAACGCCCACATCAGCTGGCCCCAATTCCTTCAACAAAGGAAAGCAGGGATTCTCAGACCATCAAAAACTGTGGGAGAGGAAGCTTAAATCCCACACAGATCAGTAGTGTCTGCTTGCTTTTTGgcactgatttttattttttgtttttgtttgatgaACATTGTACAGATGTATATATGTAATGAATGTTTACGCTAAAACCATCTTTTTCGCCATGCTATGGTTAAAAAATGCCTTCCTGTGTAGAGTGCAAACATAGAAAATTAGCATAATCTTTATCACTGTACAATATGACATGTGCCACACCAGCCTGTTATCATTTACAGCTTAGTTGTTATACAGAAAAGGAATGTGGTGGTGCAGTCATTTAGGATTGTTTAAGATTCATTCAtagcaaggaaaaaaaaaagtctatgaagtaaataataaataggaGATGTGGCATCCATTTTAAGAATGTTTTCCCTCATTCATCTAGTTGGTGTGTTTGTCAGGTTGTGAAAGCaga
>TCONS_00000170
CGTATGTGCCTAAAATAGAGTCCTGCGATGGCGAATGAGAAGTACAGCAGCGAAGGCCCCTCTCAAGAAGGAGGTAACTGTAGCTCACCTTTGGTCTCCAAGGCATCAGTCGCTCACCTTGGTAAGTTGTTTCGCCTCCAGCAGGACCGGAAGAGAAGGGAAGCAGTGTGAAAACTAAGACTGTCTCTTCCAGCAAGGCATCAGGAGACAGTCTGCGAAAGCGGCCTGCTCGTGAGATCGACCCAGAAGATGAGTCCAAAAGCACATCAGCTCCCCCTAAAATGTTCAAGTCAGGGTTTAGCATGACAGCAAAGAAACCTATGGCCATCTCTATCAAGCTGGGagcaaatAAACCTAAAGAGCCTCCCCCTGCCATACCTCCCAAGAAATCTGGACTTGCATCTGTTTTTAATGAGGACGATGATAGCGAGCCTGAAGAAATGCCACCTGAGGCAAAGATGAGGATGAAGAATATTGGCAGAGAAACGCCCACATCAGCTGGCCCCAATTCCTTCAACAAAGGAAAGCAGGGATTCTCAGACCATCAAAAACTGTGGGAGAGGAAGCTTAAATCCCACACAGATCAGTAGTGTCTGCTTGCTTTTTGgcactgatttttattttttgtttttgtttgatgaACATTGTACAGATGTATATATGTAATGAATGTTTACGCTAAAACCATCTTTTTCGCCATGCTATGGTTAAAAAATGCCTTCCTGTGTAGAGTGCAAACATAGAAAATTAGCATAATCTTTATCACTGTACAATATGACATGTGCCACACCAGCCTGTTATCATTTACAGCTTAGTTGTTATACAGAAAAGGAATGTGGTGGTGCAGTCATTTAGGATTGTTTAAGATTCATTCAtagcaaggaaaaaaaaaagtctatgaagtaaataataaataggaGATGTGGCATCCATTTTAAGAATGTTTTCCCTCATTCATCTAGTTGGTGTGTTTGTCAGGTTGTGAAAGCagaattaaattatttcattttcaaatttaatttgcTCACCTTCATGGAATTTACAAACTTGTATTTtgtggaaaagaaaaaaattatacttgTAGGGTTTtcctttttgttcttttttgttaCTGTGTTAAATTAAAGGAAAACAGAAACAAC
>TCONS_00000171
CTGCGATGGCGAATGAGAAGTACAGCAGCGAAGGCCCCTCTCAAGAAGGAGCAGGACCGGAAGAGAAGGGAAGCAGTGTGAAAACTAAGACTGTCTCTTCCAGCAAGGCATCAGGAGACAGTCTGCGAAAGCGGCCTGCTCGTGAGATCGACCCAGAAGATGAGTCCAAAAGCACATCAGCTCCCCCTAAAATGTTCAAGTCAGGGTTTAGCATGACAGCAAAGAAACCTATGGCCATCTCTATCAAGCTGGGagcaaatAAACCTAAAGAGCCTCCCCCTGCCATACCTCCCAAGAAATCTGGACTTGCATCTGTTTTTAATGAGGACGATGATGTATGTGTCATTCTTTGATTAAGCTGCTGCCTTTGTGTTTCTTGCATATGTAAAATCATgcaaataaatatctaaaatagaCATTTCCTTGCTTTGCATTTAATGTTTCAGAGCGAGCCTGAAGAAATGCCACCTGAGGCAAAGATGAGGATGAAGAATATTGGCAGAGAAACGCCCACATCAGCTGGCCCCAATTCCTTCAACAAAGGAAAGCAGGGATTCTCAGACCATCAAAAACTGTGGGAGAGGAAGCTTAAATCCCACACAGATCAGTAGTGTCTGCTTGCTTTTTGgcactgatttttattttttgtttttgtttgatgaACATTGTACAGATGTATATATGTAATGAATGTTTACGCTAAAACCATCTTTTTCGCCATGCTATGGTTAAAAAATGCCTTCCTGTGTAGAGTGCAAACATAGAAAATTAGCATAATCTTTATCACTGTACAATA
>TCONS_00000172
GTACAGCAGCGAAGGCCCCTCTCAAGAAGGAGGTCCTCCTGGCATCCCTCATCTTTCAGGTAACTGTAGCTCACCTTTGGTCTCCAAGGCATCAGTCGCTCACCTTGCAAGGCATCAGGAGACAGTCTGCGAAAGCGGCCTGCTCGTGAGATCGACCCAGAAGATGAGTCCAAAAGCACATCAGCTCCCCCTAAAATGTTCAAGTCAGGGTTTAGCATGACAGCAAAGAAACCTATGGCCATCTCTATCAAGCTGGGagcaaatAAACCTAAAGAGCCTCCCCCTGCCATACCTCCCAAGAAATCTGGACTTGCATCTGTTTTTAATGAGGACGATGATAGCGAGCCTGAAGAAATGCCACCTGAGGCAAAGATGAGGATGAAGAATATTGGCAGAGAAACGCCCACATCAGCTGGCCCCAATTCCTTCAACAAAGGAAAGCAGGGATTCTCAGACCATCAAAAACTGTGGGAGAGGAAGCTTAAATCCCACACAGATCAGTAGTGTCTGCTTGCTTTTTGgcactgatttttattttttgtttttgtttgatgaACATTGTACAGATGTATATATGTAATGAATGTTTACGCTAAAACCATCTTTTTCGCCATGCTATGGTTAAAAAATGCCTTCCTGTGTAGAGTGCAAACATAGAAAATTAGCATAATCTTTATCACTGTACAATATGACATGTGCCACACCAGCCTGTTATCATTTACAGCTTAGTTGTTATACAGAAAAGGAATGTGGTGGTGCAGTCATTTAGGATTGTTTAAGATTCATTCAtagcaaggaaaaaaaaaagtctatgaagtaaataataaataggaGATGTGGCATCCATTT
>TCONS_00000173
aaaactgtttttattttgctgTTAATTCACATGTTGAAGTCTGCGAGAATATATAGAGAACTCGCATCTGTCCACGTCCTCCTGGCATCCCTCATCTTTCAGGTAACTGTAGCTCACCTTTGGTCTCCAAGGCATCAGTCGCTCACCTTGCAAGGCATCAGGAGACAGTCTGCGAAAGCGGCCTGCTCGTGAGATCGACCCAGAAGATGAGTCCAAAAGCACATCAGCTCCCCCTAAAATGTTCAAGTCAGGGTTTAGCATGACAGCAAAGAAACCTATGGCCATCTCTATCAAGCTGGGagcaaatAAACCTAAAGAGCCTCCCCCTGCCATACCTCCCAAGAAATCTGGACTTGCATCTGTTTTTAATGAGGACGATGATAGCGAGCCTGAAGAAATGCCACCTGAGGCAAAGATGAGGATGAAGAATATTGGCAGAGAAACGCCCACATCAGCTGGCCCCAATTCCTTCAACAAAGGAAAGCAGGGATTCTCAGACCATCAAAAACTGTGGGA

Function

symbol description
pcnp Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be active in nucleus. Orthologous to human PCNP (PEST proteolytic signal containing nuclear protein).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-130 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be active in nucleus. Orthologous to human PCNP (PEST proteolytic signal containing nuclear protein).

Ensembl:

ensembl_id ENSDARG00000037713

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000167 False 996 mRNA 0.41 5 7556965 7561134
TCONS_00000168 False 1087 mRNA 0.40 5 7556965 7561222
TCONS_00000169 False 951 mRNA 0.42 6 7556977 7561071
TCONS_00000170 False 1142 mRNA 0.40 5 7556977 7561221
TCONS_00000171 False 796 lncRNA 0.42 4 7556999 7560854
TCONS_00000172 False 849 mRNA 0.43 6 7557018 7561014
TCONS_00000173 True 516 mRNA 0.47 6 7557061 7560638

Neighbor

gene id symbol gene type direction distance location
XLOC_000085 lancl1 coding upstream 2502 7517449 ~ 7554463 (+)
XLOC_000084 NA coding upstream 44203 7512529 ~ 7512762 (+)
XLOC_000083 ERBB4 coding upstream 108170 7189856 ~ 7448795 (+)
XLOC_000082 CABZ01075319.1 coding upstream 441051 7092273 ~ 7115914 (+)
XLOC_000081 CU929161.1 coding upstream 493022 7063837 ~ 7063943 (+)
XLOC_000087 NA coding downstream 110899 7672121 ~ 7674229 (+)
XLOC_000088 en1b coding downstream 118106 7679328 ~ 7683372 (+)
XLOC_000089 CR855320.1 coding downstream 394808 7956030 ~ 7961696 (+)
XLOC_000090 CR855320.2 coding downstream 426830 7988052 ~ 7989314 (+)
XLOC_000091 SLC5A10 coding downstream 549340 8110562 ~ 8163167 (+)
XLOC_000080 NA non-coding upstream 566938 6956913 ~ 6990027 (+)
XLOC_000078 CU302223.1 non-coding upstream 769161 6787690 ~ 6787804 (+)
XLOC_000097 NA non-coding downstream 1012555 8573777 ~ 8575057 (+)
XLOC_000098 AL928650.2 non-coding downstream 1014085 8575307 ~ 8577274 (+)
XLOC_000100 NA non-coding downstream 1026008 8587230 ~ 8590636 (+)
XLOC_000105 NA non-coding downstream 1389652 8950874 ~ 8965939 (+)

Expression


Co-expression Network