XLOC_000087


Basic Information

Item Value
gene id XLOC_000087
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7672121 ~ 7674229 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002810
CCGAATATTCACAGTACAGTTATAGGGGccacaagttgtcactgttcaGAATTTAACGaatgtctgaatataaaaccaaatttacctcaattaaaaaacaaatacaatggaagccAATGTTTAGTTTTACatctttcttcaaagtatcttctattgtgtccaacagaagtaagaaactcACAAAGGATTTGAAACGAGTgaaggagtaaatgatgactgaatttagatctttgagtgaactatctGACATGGATCGAAGAACAATtgattaagCGCTCCTCTTGCTCAGCGCCCTGCCGAAAATGTCGATCCTCTCTGGCGGAGATGCGGCTCTCTCTCGGTCCCGCCGAGACGTGGCCGTGTTTGATCTGGACCGGGAGCGCGACTCTCTCCTGCGGTTCCTTTTGGACTCTCGCGACTTGGAGCGCCTCTTCCTCTCCCTGTCCCGGGATCTCGATCGAGATCTGCTTCGCTTTTTGCTGTGCTTACTGGTTTTGGAGTGCTTGGAGCGGGAAGAGCTGCGGCTCCTCGAGCGACCCATTTCAGACGCCGGTTGAGTTGCAGAAGCCAGGAGACTGAACACCACTAAAGCATCGGACTGACGAACACACACACCTGCTAGACCTTCACACTAACCCCAAATCGCACATTTAAGGAATCAGCGCAGACTGCATGACAATAATCTCGAAGGCGGAACTCTTATTTGGAAGTAAATGGTTTAATAACAATGGTATTTTATCTGCAGCATACAATTTATCTTGTATAGTTAAAAAGCAAGATGGAGGATGGCTGATCTCAGATCCCAGCATGCAATtccttgtttttcttttgttgtgaGGATCGAGGCTTGGCCACATAGATGATTGCCATCATGTGGCGTGGAGAGCAAACGAGTGAATTGTTTGGAGTTCATTCAATGAACCGATTTGCAACCGAGTCATCACTCTTATTTCACTCTTGCATAACAAAGCTCTAATTTGAAAATGAAATGTAGCCACATTTTAtcatttttgtaaattagcctttaatgtttttagattattttaaaatccCATTTAAGTTAACTGGTCATTagctaaaatgtacaaaaacattTATGATGGATTTCTTATATTGTTCCCCTACATAATGTTAACGTTTACTATTAAATAGAATTAAAATGTGTCATATCATACAAAAATAACTTCAtgtattttgaatatatattcaCGAAAATGCATAAATCAAAAATCTGGAGCAAGTTGGcatcaatagcctagtggttataAGTGCggcgacatatagcaccatggtgctcatggCAACCctagttcgattcccagctcaaggtcctttgccaacccttcccctctctctgctcgaaatactttcctgtctgtaacctccactgtCTTATATCAAATAAacgtgaaaaacccctaaaaacaGTTTGGAGCAGCCGCTTTTCCTGGGCTGGGTTGCAGGGGCAGCAGTTTTAGGAGAGAAACCCACactttcctctccccagacaGCTCCTttggggggatcccgaggcgttcccaggtcaGTCAaaatagtccctccagcgtgtgcTGGGTCTTCCACGAGGCCTcttcccggtgggacatgcctgggacacttccctaggtaggcgtccaggaggcaaccgaaacagatgcccga

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0000974 Prp19 complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002810 True 1662 lncRNA 0.44 2 7672121 7674229

Neighbor

gene id symbol gene type direction distance location
XLOC_000086 pcnp coding upstream 110899 7556965 ~ 7561222 (+)
XLOC_000085 lancl1 coding upstream 117658 7517449 ~ 7554463 (+)
XLOC_000084 NA coding upstream 159359 7512529 ~ 7512762 (+)
XLOC_000083 ERBB4 coding upstream 223326 7189856 ~ 7448795 (+)
XLOC_000082 CABZ01075319.1 coding upstream 556207 7092273 ~ 7115914 (+)
XLOC_000088 en1b coding downstream 5099 7679328 ~ 7683372 (+)
XLOC_000089 CR855320.1 coding downstream 281801 7956030 ~ 7961696 (+)
XLOC_000090 CR855320.2 coding downstream 313823 7988052 ~ 7989314 (+)
XLOC_000091 SLC5A10 coding downstream 436333 8110562 ~ 8163167 (+)
XLOC_000092 cacna1hb coding downstream 630675 8304904 ~ 8404005 (+)
XLOC_000081 CU929161.1 non-coding upstream 608178 7063837 ~ 7063943 (+)
XLOC_000080 NA non-coding upstream 682094 6956913 ~ 6990027 (+)
XLOC_000078 CU302223.1 non-coding upstream 884317 6787690 ~ 6787804 (+)
XLOC_000097 NA non-coding downstream 899548 8573777 ~ 8575057 (+)
XLOC_000098 AL928650.2 non-coding downstream 901078 8575307 ~ 8577274 (+)
XLOC_000100 NA non-coding downstream 913001 8587230 ~ 8590636 (+)
XLOC_000105 NA non-coding downstream 1276645 8950874 ~ 8965939 (+)
XLOC_000106 NA non-coding downstream 1293250 8967479 ~ 8976422 (+)

Expression


Co-expression Network