XLOC_000089 (CR855320.1)


Basic Information

Item Value
gene id XLOC_000089
gene name CR855320.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7956030 ~ 7961696 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000176
gccgtgacgcagcttcaaaaattcgtttcaaactggaagtacgaatttgcttgaaataacgcaaaaacaaccaatttacactttttagtgaaatataggtgtcctaatagtgtttttgtcacgattgtggatctgtctgttcttctatgatgtgtctgcgtgtgtgtatgtgtgtgtgtgtgtacggtgTGGTGCGTTATGCGTTTTACGTATatgcgtgtatgagtgtgtgtgttgggtgtctctgtgtctgtgttaGAGTCGCGTTGCTGTCAGTTGTGTTTACCTTATCAGCTGGGTGGTCACGTGTACGCTGTCACCAGCCTTGCCGTGCGCAGCACCGCTCAGCTGTAATCAGTGGACCACAGGTGCAGCGCATTACCGCGCCTATATATGTTCAGCGTTTCTGTCTCACAGTGTCAGTTCGTTTTCttcacgtctgtttgtctgtgtccTGTCAGGTTCCGGTCGCTGAGTTCTGGTCGTGTGTCGCGGGGAGAGCTCTGTGTTTGGACTCTTGTACCTTTCTGTTGGCGGCTCTCTGATCTTGTTCTTCAGTGCTCCCTGTTCGATTTACATTTCCTGCTGCTCGCTTGACTCACTCATCATCTTCCTGCGTTCTTccttctgtcattctgtctgagtcaataaataattattttacttgcaattgggtcTCCCTGTATTCcgtgacagaacgaactgaccactGAGATGGACCCAGCAAGTGTTACCAAAATCCAGGATTTCCTCGCCCACAATTCAGCCCGACTGGATCATCAGGACAAACAAATGGCAGTGACCGGCCAGGCCATTGAGGCGCTGGTCACTCAAGTTTCTGAGCTCACGACTCAGGTTCAGAGACTGGGTTCTGAGCTTCGTGCTGAAGCTGTCCAGCAAGCTCCTCCCACCATTCCACCAGCAGCTCATGCGCTAGAAGAGACCCCCAGATCCACTGAACCGCGACTTCCACCACCAGCATGTTACGCCGGCGAACCAGAATTGTGCCGGTCATTTATAGCAAAATGTTCACTTTACATCACGCTACAGCCTTCGTCTTTCCCTAACGAAGAGAGTAAGGTGGCGTTTACGATCAATTTGCTGACAGGTAAAGCGGCACTTTGGGGTACCACTGTTTGGGAGCGTAAACTCCCCTGCTGTAACTCCTTTAAAGCTTTCTCAGAGGAGTTAAAAACTGTGTTTGACCGAGCGGTCTCTGGCAGAGAGGCGGCTCGTAAGCTCGCTGAACTCAGACAGAATAAGTTGAGTGTTGCTGAATATTCCATTGACTTTCGTACTCTGGCGGCCGAATGTAAATGGAATGCCGAAGCTCAGTGGGACATGTTTTTGCACGGACTAGCAGATTATATTAAAGATGAAATCTACGTCATGGATCTGCCTAAGACACTGGATGGGCTTATTGATTTAGCCATCAGAGTGGACACTCGGTTACAACAGAGAGGTTCCCACAAGAAACTGCACACTCCACCTCTTCCCACGCAATCTCTTTTCGCTGCATCTTCTGAACCCCCCTCATCTGATCTCGAGCCGGAACCCATGCAGATGGGCAGATTTCGGCTTTCCACGGAGGAGAGGCGTCGTCGCCGCATGGAAGGACTATGCATGTACTGTGGAGTCGCTGGACATTTTGTGGCTTCGTGTCTAGCCAAGAATAAGAATTCGTCGCCGGGTAAGAGTTTACTGGCTGGTGAAATCACCCTTGACAAGTCCCCTAACACAACCATGCTGCCAGTCAATCTATCTTTTAACTCTATCATGCACCACTGTCATGCGCTCATCGACTCCGGAGCCGAGGGGAATTTTATTGACTCTAAGCTGGCGTACAGTTTGAAAATCCCTGTTGTTCCCCTTTCTCTTCCTATCGCAGTGCACGCTCTTAGCGGTCTTTCTCTCCCCACCATCACACACTCCACTGCTCCTATAAGACTCATTACTTCTGGTAACCATTCCGAAACTATTGAGTTTTTCTTAACAGAGACTATTGCCACTCCTGTGATCTTGGGACATCCCTGGTTGGTTTTGCACAAACCTCACATTAATTGGGGACATAATACTGTGCTTTCTTGGAGTGAGAGCTGTCATAAATCTTGTCTAGTGTCTGCTTGTTCTGCTGTTTCtcgttctgtgtttcaggaggagcagatggatctgtcaaacgtgccccgtgagtaccatgacctgaagagagtgttcagtaagtcccgggctgcttctttgcctcctcatcgtccctatgactgtgcaatagacttattgccaggtacgtctccgcctaaaggcaaatTATACTCGCTTTCTGctccagagagggaggccatggggaaatatatttctgattctctagcagccaagatcattcgcccctcttcttcaccggcgggggcgggatttttttttgtaaaaaagaaggatggttccctTCGCCCGTGCATTgattatcgagggctgaacaaCATAACGGTCAAGAATACATACCCTTTGCCGTTGATGTCTTCAGCCTTTGAACGTCTGCAGGGGGCGAACTTTTTTacaaaattagatctccgcaatgcttatcatttggttcgcataagaGCGGGGGATGAGTGGAAATCAGCGTTTAACACCCCCAGAGGGCATTTTGAGTACTGCGTTCTGCCCTTCGGCCTTTCCAACGCTCCGGCTGTTTTCCAAGCATTCGTCAATGACGTGCtgagagatatgatagatcagttcatttatgtttacctggatgacatactgatattttcccattctctccaggaacatgttcaGCAcatcaggcgagtgcttcagaggctgttagagaatggtctttatgtcaaggcggagaaatgcgtttttcatgcacagtctgttccctttctagggcatatcgtgtcagtcgaggggttgcgcatggatccagagaagattaaggctgtggtaaattggccaactcctgattcccgtaaggccctgcagaggtttctgggCTTTGCCAATTTCTACCGGcgatttattcgcaatttcagccagctcgccgcacctCTGACCGCCTTGACCTCCTCCAAAACGCCGTTCAGGTGGTCCAGCGCAGCCGAAGCTGCGTTCTCAAAACTGAAAGGCTGCTTTGTTTCAGCTCCAATCCTGATAACCcctgatccctcccggcagtttgtggtggaggtcgaCGCGTCAGAGGTCGGGGTCGgagctatcctgtcccagcgctccTCCTCGGATGGCAAGATCCACCCGTGCGCGTATTATTCTCATCGGTTATCAGCCGCAGAAagtaattacgacattggtaatcgagagctgttggccgtcaagcttgctttggaggagtggcgtcattggttagAGGGGTCGGGGGTCCCTTTTATCGtctggaccgatcataagaatcTTGAGTACATCAAATCCGCCAAAAGATTAAACtctaggcaggctcggtgggcgtTATTTTTCGGACGGTTCAATTTCACCATCTCATATAGACCGGGATCTAAGAACATTAAgcccgacgcgttatcccgtctttttgattcttcgGAGCGTACATCGTCACTCGAACCCGTAGTGCCTAAGCGGATTGTTATTTCTAACATCACATGGGAGATAGAGTCGAAGGTTCGCGCAGCCTtagatggggtaacgcccccgattGGATGCCCACCGAGTCGGTTATTCGTGCCAGAGAAACTTCGGTCAGATGTTATTcgatggggacattcctccaaagtagCCTGTCATCCTGGGGTGAGTCGCACATCATTTGTTATTAAacaacgattctggtggccagcatTGGCTCGTGATGTGCGTGATTTTGTATTGGCTTGCTCTGTGTGTGCTGTTTCCAAGACTTCCAATCGGCCACCCGCgggactccttcagccgctgtcagtaccttcgagaccctggtcccaCATCTCGCTAGATTTCGTTACGGGGCTGCCTCCCTCCAACGGCAACACGGTGATTTTAACCGtagtggaccggttctcgaaggctgctcatttcgtccctctgcccaaattaccgtcagccagagagacagcggttgctgtcattaatcacgtctttcgcattcatggcctcccgacggacgtggtttctgacagggggcctcagtttatctctaaattttggagggAATTCTGTCGTTTATTGGGGGCCACTGTGAGTCTTTCGTCTGGCTTTCATCCCCAGAGTAACGGTCAGACCGagagagccaatcaggatcttgagcgCACATTGCGATGTTTGGTGTCACAGAATCCCTCCTCCTGGAGTCAGCAGCTttcgtgggtggagtacgcacataattcgttaccagtgtcggccacgggcctttctccgtttcagtgtagtctaggttaccagccaccagtttttcccagtctggaatctgaagtcgcggtcccctccgttcacgcctttgtccagaggtgccgccgcacttggagcagggccagacagaccctcctccaagtgggtgtgcgcaccaaggctaaagccgatcgccaccggtctaagcctcccgtttacgttgtcggtcaaaaagtgtggctttcaactaagaatattccgCTCCGCACCGTTTGTAATAAGCtagctcctaaatttattggcccatttattgtcactaaaatcattagtcctgtggcaatccgcctcaaattacctccagcgtacaggagaattcatcccgtgttccatgtatctaaagtaaagcccgtttttcatacggcaattaatccgcacacaccagttccccccccgccgcgtctcgtagatggggagactgcttattcggttaagcgcattctggactctagacggaggggacgaggattccagtacttggtggactgggaaggttacggtccTGAGCACAGAAGTTGGGTTCCGGCCGGGGACATactggatcactctcttatcgatgattacaatcgccaggtatgCTCGTCTGGGAACGCCAGGAGGCGTTCCTAGGAGAGAGGGTATTGTCACGATTGTGGATCTGTCTGttcttctatgatgtgtctgcgtgtgtgtatgtgtgtgtgtgtgtacggtgTGGTGCGTTATGCGTTTTACGTATatgcgtgtatgagtgtgtgtgttgggtgtctctgtgtctgtgttaGAGTCGCGTTGCTGTCAGTTGTGTTTACCTTATCAGCTGGGTGGTCACGTGTACGCTGTCACCAGCCTTGCCGTGCGCAGCACCGCTCAGCTGTAATCAGTGGACCACAGGTGCAGCGCATTACCGCGCCTATATATGTTCAGCGTTTCTGTCTCACACTGTCAGTTCGTTTTCttcacgtctgtttgtctgtgtccTGTCAGGTTCCGGTCGCTGAGTTCTGGTCGTGTGTCGCGGGGAGAGCTCTGTGTTTGGACTCTTGTACCTTTCTGTTGGCGGCTCTCTGATCTTGTTCTTCAGTGCTCCCTGTTCGATTTACATTTCCTGCTGCTCGCTTGACTCACTCATCATCTTCCTGCGTTCTTccttctgtcattctgtctgagtcaataaataattattttacttgcaattgggtcTCCCTGTATTCCGTGAcagtttttagcagtgtgggacacatatacgactgtcaacagctcaaaaaatgtgttttggtgtttcgtgac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099359

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000176 True 5667 mRNA 0.50 1 7956030 7961696

Neighbor

gene id symbol gene type direction distance location
XLOC_000088 en1b coding upstream 272658 7679328 ~ 7683372 (+)
XLOC_000087 NA coding upstream 281801 7672121 ~ 7674229 (+)
XLOC_000086 pcnp coding upstream 394808 7556965 ~ 7561222 (+)
XLOC_000085 lancl1 coding upstream 401567 7517449 ~ 7554463 (+)
XLOC_000084 NA coding upstream 443268 7512529 ~ 7512762 (+)
XLOC_000090 CR855320.2 coding downstream 26356 7988052 ~ 7989314 (+)
XLOC_000091 SLC5A10 coding downstream 148866 8110562 ~ 8163167 (+)
XLOC_000092 cacna1hb coding downstream 343208 8304904 ~ 8404005 (+)
XLOC_000093 myo15ab coding downstream 480375 8442071 ~ 8507230 (+)
XLOC_000094 alkbh5 coding downstream 547057 8508753 ~ 8516595 (+)
XLOC_000082 CABZ01075319.1 non-coding upstream 840116 7092273 ~ 7115914 (+)
XLOC_000081 CU929161.1 non-coding upstream 892087 7063837 ~ 7063943 (+)
XLOC_000080 NA non-coding upstream 966003 6956913 ~ 6990027 (+)
XLOC_000097 NA non-coding downstream 612081 8573777 ~ 8575057 (+)
XLOC_000098 AL928650.2 non-coding downstream 613611 8575307 ~ 8577274 (+)
XLOC_000100 NA non-coding downstream 625534 8587230 ~ 8590636 (+)
XLOC_000105 NA non-coding downstream 989178 8950874 ~ 8965939 (+)
XLOC_000106 NA non-coding downstream 1005783 8967479 ~ 8976422 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G152205 LOC107686478,LOC107670948 non-coding NC_056720.1 CM032089.1 13116438 ~ 13121691 (+)