Fish Transcriptome and Expression Database

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model fish

XLOC_008910 (LO017713.1)

Basic Information

Item	Value
gene id	XLOC_008910
gene name	LO017713.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007126.7
NCBI id	CM002899.2
chromosome length	48040578
location	1321790 ~ 1321906 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017597
AGGGTCAGATCCTGCTCTCTgctactctcacatggtcgcccactgaagctaagcagggctgcgcccggtcagtacctggatgggaggacacatgggaaagctaggttgctgctgcaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108327

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00017597	True	117	rRNA	0.58	1	1321790	1321906

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_008909	lxn	coding	downstream	122904	1179876 ~ 1198886 (-)
XLOC_008908	NA	coding	downstream	178721	1140445 ~ 1143069 (-)
XLOC_008907	aadac	coding	downstream	255521	1045374 ~ 1066269 (-)
XLOC_008906	si:dkey-77f5.3	coding	downstream	283597	1033243 ~ 1038193 (-)
XLOC_008905	si:dkey-77f5.4	coding	downstream	290279	1025308 ~ 1031511 (-)
XLOC_008911	si:dkeyp-97b10.3	coding	upstream	130928	1452834 ~ 1485086 (-)
XLOC_008912	ift80	coding	upstream	172587	1494493 ~ 1534258 (-)
XLOC_008913	trim59	coding	upstream	252450	1574356 ~ 1584137 (-)
XLOC_008914	nnr	coding	upstream	267907	1589813 ~ 1590858 (-)
XLOC_008915	kpna4	coding	upstream	274602	1596508 ~ 1622485 (-)
XLOC_008903	NA	non-coding	downstream	313431	1007600 ~ 1008359 (-)
XLOC_008902	NA	non-coding	downstream	328203	986144 ~ 993587 (-)
XLOC_008898	NA	non-coding	downstream	413483	877204 ~ 908307 (-)
XLOC_008927	AL954387.2	non-coding	upstream	944063	2265969 ~ 2266083 (-)
XLOC_008928	NA	non-coding	upstream	1001760	2323666 ~ 2328284 (-)
XLOC_008932	NA	non-coding	upstream	1276898	2598804 ~ 2611170 (-)
XLOC_008933	NA	non-coding	upstream	1296373	2618279 ~ 2625928 (-)
XLOC_008940	CABZ01086049.1	non-coding	upstream	1414477	2736383 ~ 2736498 (-)
XLOC_008899	NA	non-coding	downstream	420911	899089 ~ 900879 (-)

Expression

Co-expression Network