XLOC_008918 (rabgef1l)


Basic Information

Item Value
gene id XLOC_008918
gene name rabgef1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1718668 ~ 1733259 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017612
CGTCAACACAAATACACTCGATCTTACTATCAATGACGAGCAGAAATCGGTTATTCGGGATATATTAAGGTCTCTGTGGTGTGTGACATATATCTAGCCAGGTCTGTGTTCAGTATTCACATCTGTTCAACACGTCTGACAGGATGGACTCTCAGGTGGCGCGCAGCGGCATCAGCGTCCAGCAGTCTGACCTCATGTGTAAGAGAGGATGCGGTTTCTATGGGAACGCCGTCTGGCAGGGCCTGTGCTCGAAATGCTGGCGAGAGGAGAACCAGTGCACCAGATCCAAGCAGATACAGGAGGACCGAGCACTAGCCGAGAGGTTACAGCGAGAGGAGGAAGCGGCGTATGCTAGCAGCAGTGAGGGGGCTCGCTCTCAGCCCGCATCCTCCAAAACAAACAGTGTGCCCATGGTCAAGAGGCTCTTCACCTCTGCTCCCAAAACACCTGGAAGGAGAGATGCAGGATCTTCAAAGACGCCGGTGAGCCAGAGCTCGTCCCAGAGCCGGCAGCCCAGCGCAGAATGTGACCGCATTACACAGCACTTCATCGACTTCCTCAAACCCTTCCAGAGACCCGGATATGACATTTTCAAGCAGTGCCATGCCTTTGCTGAAAACATTGCACACAAAAAGGTTGTTGGCTGTGAAGATCTCTCAGACTCTGTGCAGGACTTTTATCAGAGCATGTCTGAATACCTGCAGACCAACTTTAAAGGCTCTCCTGAAGTGGTGGAGACCGTGATGGAGGAGGTGGAGCGGTATGTGATGGGTCGTCTGTATGAGCAGCTCTTCTGTCCTGACCACACTGATGATGAGAAGAAAGACCTGACCGTCCAGAAGAGAATCAGGGCTTTGCACTGGGTGTCCATTGCGATGCTGTGTGTTCCTTTAGACGAGCAGATCCCCAAAGTGTCAGACAGCGTGGAGAGAGCCATAACAGACCTGATCAACTTGGACTCCAAAAAGGTTCCTAAGGAGAAGCTGGCGTGTGTCACCAGGTGCAGTAAACACATCCTGACGGCCATCCAGGGGAGTAAGAAAGCGGCCGCCTCAGCAGACGACTTTCTGCCTGCGCTGGTCTACATCATCCTGAAGGCTAATCCACCACGATTACACTCCAACATCCAGTACATCACCCGCTACTGCAACCCCAGCCGCCTCATGAGCGGAGAGGACGGATACTACTTCACTAATCTATGTTGCGCCGTGTCCTTCATCGAGAAGCTTGATGCGCAATCGCTAAACTTGAGTCCTGAAGACTTCGAGCGCTACATGTCTGGAGCGACGTCTCCATCCGGCTGCAGCACACAGAATGGCTTTAGTGCGGCGGTCAGTAGCGCAGACGTCCCGCCGCTGGACCCGAAGAGGAACCATCACCAGAAAACAGCTCCGGAAACAGACCTCATCGAATGGAGGGATGGCCAGGAGCTCTCAGTGCTGGGTTTACTAGAAGgagaaacacacaccaacactgcGAACTTCACCATCGACTCAGAAAACATCGGTGGAGAGAGTCTGCCTCCGCCGTTACAGCCGCAGAAATTCACTGGTTAGCTCAAATCTCAACCGCACATAGACTGACATCGGCTGGAGACTCTTTCTCAGAGGTTAGTGATGGGCTCACAAACGCTGGGCTCAATTTAAACATCTGACAACCAGCAGTCCAGCGTAGTTCCTGCTTCACTTTCAAAATTGAGTAGAAGATAAGAGGAGAATTCATGTCTGATTTTAGGACCATCAAGATTTTGttttgtgcgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgtgtgtgtgtgtggtgttgtgaAAAGATTAATAACTTGACATTATGCAATATTTATATGTCAGAAGAGTTGTTTCAAATGTCTGTGTGGTGTTGCGAATCCGTTCATTAGAAATCAAATATTTGTGGTTTTAAGATCATATTGCGCTGCAAATATATCCCTTTATTACTTAGAGATTGTCTCATTTCttgtacaaatatctaaaaagaattaaatcaagaagcattttttacacAAGCAACAAATAATgtcatttcaaataaacaaaaaaaacaa
>TCONS_00017613
attatggtatttttatgattttgaaGAGTTAAAAActgacatacagcacctttaaaattcACTCTAGTTATTGAAGTGTCCAGTGGATTTCAGATTCCAACACTTGCTCTATATGTTCACATTTATACTACATACGAACATGTCTGATGGCTGTGTGTACATGTCTGTCAGGCTCTCCTGAAGTGGTGGAGACCGTGATGGAGGAGGTGGAGCGGTATGTGATGGGTCGTCTGTATGAGCAGCTCTTCTGTCCTGACCACACTGATGATGAGAAGAAAGACCTGACCGTCCAGAAGAGAATCAGGTGTGCTGGAAGCATTGCTGGAGTCATGTGAGTTACGAAATGCTAACAGCAGTGTaagaatctgtgtgtgtgtgtttgtgtgtgtcttcagGGCTTTGCACTGGGTGTCCATTGCGATGCTGTGTGTTCCTTTAGACGAGCAGATCCCCAAAGTGTCAGACAGCGTGGAGAGAGCCATAACAGACCTGATCAACTTGGACTCCAAAAAGGTTCCTAAGGAGAAGCTGGCGTGTGTCACCAGGTGCAGTAAACACATCCTGACGGCCATCCAGGGGAG
>TCONS_00017614
CGCTTCCGGCGGTGAAAGGATTTCCGTCAACACAAATACACTCGATCTTACTATCAATGACGAGCAGAAATCGGTTATTCGGGATATATTAAGGATGGACTCTCAGGTGGCGCGCAGCGGCATCAGCGTCCAGCAGTCTGACCTCATGTGTAAGAGAGGATGCGGTTTCTATGGGAACGCCGTCTGGCAGGGCCTGTGCTCGAAATGCTGGCGAGAGGAGAACCAGTGCACCAGATCCAAGCAGATACAGGAGGACCGAGCACTAGCCGAGAGGTTACAGCGAGAGGAGGAAGCGGCGTATGCTAGCAGCAGTGAGGGGGCTCGCTCTCAGCCCGCATCCTCCAAAACAAACAGTGTGCCCATGGTCAAGAGGCTCTTCACCTCTGCTCCCAAAACACCTGGAAGGAGAGATGCAGGATCTTCAAAGACGCCGGTGAGCCAGAGCTCGTCCCAGAGCCGGCAGCCCAGCGCAGAATGTGACCGCATTACACAGCACTTCATCGACTTCCTCAAACCCTTCCAGAGACCCGGATATGACATTTTCAAGCAGTGCCATGCCTTTGCTGAAAACATTGCACACAA

Function

symbol description
rabgef1l Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human RABGEF1 (RAB guanine nucleotide exchange factor 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-813 Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human RABGEF1 (RAB guanine nucleotide exchange factor 1).

Ensembl:

ensembl_id ENSDARG00000015968

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017612 False 2097 mRNA 0.49 9 1718668 1733235
TCONS_00017613 False 581 lncRNA 0.46 2 1721587 1725484
TCONS_00017614 True 582 mRNA 0.54 4 1727491 1733259

Neighbor

gene id symbol gene type direction distance location
XLOC_008917 sptssb coding downstream 31464 1679962 ~ 1687204 (-)
XLOC_008916 ppm1lb coding downstream 66902 1630815 ~ 1651766 (-)
XLOC_008915 kpna4 coding downstream 96183 1596508 ~ 1622485 (-)
XLOC_008914 nnr coding downstream 127810 1589813 ~ 1590858 (-)
XLOC_008913 trim59 coding downstream 134531 1574356 ~ 1584137 (-)
XLOC_008919 stx1a coding upstream 1185 1734444 ~ 1746963 (-)
XLOC_008920 bud23 coding upstream 16584 1749843 ~ 1765137 (-)
XLOC_008921 mmp28 coding upstream 45514 1778773 ~ 1822548 (-)
XLOC_008922 taf15 coding upstream 91913 1825172 ~ 1844048 (-)
XLOC_008923 porb coding upstream 113876 1847135 ~ 1885247 (-)
XLOC_008910 LO017713.1 non-coding downstream 396762 1321790 ~ 1321906 (-)
XLOC_008908 NA non-coding downstream 575599 1140445 ~ 1143069 (-)
XLOC_008903 NA non-coding downstream 710309 1007600 ~ 1008359 (-)
XLOC_008902 NA non-coding downstream 725081 986144 ~ 993587 (-)
XLOC_008899 NA non-coding downstream 817789 899089 ~ 900879 (-)
XLOC_008927 AL954387.2 non-coding upstream 532710 2265969 ~ 2266083 (-)
XLOC_008928 NA non-coding upstream 590407 2323666 ~ 2328284 (-)
XLOC_008932 NA non-coding upstream 865545 2598804 ~ 2611170 (-)
XLOC_008933 NA non-coding upstream 885020 2618279 ~ 2625928 (-)
XLOC_008940 CABZ01086049.1 non-coding upstream 1003124 2736383 ~ 2736498 (-)

Expression


Co-expression Network