XLOC_008921 (mmp28)


Basic Information

Item Value
gene id XLOC_008921
gene name mmp28
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1778773 ~ 1822548 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017619
CAGAGATATTCCGGTTGATAGTGTTCAGCATCTCTGAAAGgtagttttaaaaaaagtgtgcCCATTGCTTTGTCACACAACAAAACAACTCCACTAACAGTACCAACAGTTTCACTTAATGCTaacttgtttaaattaaatgtgtacTGAAATTAGCTGAAAATACTAATTTTCTTGGACATAATCATTGATGTGAACAGCGTTTGCTTTATAGAGCTCTTTGACATTGGTTTTTCTTTGGCTTCTGTAACTGTGTATTATGGCAAGCGTAATAAATGTATATGCTCacctgagtaggataaactttttatctgatAAAGGTTTCAAGATTAGTAATTAGAATTAAATTAATAGGCCAGTTGTAGCACTTCTATTATATCGCTTTTGACTTAATAACAGACAATTTCGAGTTTACATCGAACATTTCTGAGGGgaaaaatgtcagaattgtgagtttgcATGACGCAATAAcggtttgtttttaaaattcagtGGCGGGAACGGGCTTCCACGGTGAAGCTATAAATCATGAGTGTAAAGTAGATGAGCCTCAGTTGACGCCCGTGCGTTTTGGAGGCGGAACGAGCCAAAGAATTTATAGTGAACCGCTCTCTCTTACCTCACTGATGTCAGAGCAGTCCAGCTGTGCGTTACTCgctgtatatatttattcttatatttaaatgaatgtaacTTGATTTACCACATTTCAGCGTTCATAAATGATGTTTCTGCTGCTGCTGTGTGTTCAGACCTCTTGCAGCTCTCCAATCTCCTCACCTGCTCAGGGCTTTCTGGAGCAGTATGGATACCTGTATAAAGACAACGAAACTTACCGCACAGCTGAAGTCAAGACTGCTATCAGAGAGTTTCAGTGGTTGTCTTGGCTGCCTGTCACTGGCCATCTGGACGCTGCGACTTTGGAAAAGATGGCATCGCCCCGCTGTGGGGTTACAGACGCGGGTAGCATTGATGCCTGGCAGGACAGAATAAACGGCATCTTTACGGGCAGACATGGGCAACATCTCCGTAAGAAGCGTTACACTCAGTTAGGGGAGAAATGGCAGAAGAAACAGCTGAGCTACCGCATCCTGAACTGGCCCCGGAGCCTTTCTACCAGTCAGGTGCATCTGGCAGTGAGTGCAGCGTTCCAGCTGTGGAGTAATGCCTCCGGACTGCAGTTCCTGGAGCTCCATCAGGGGCCAGCAGACATACGACTCGCCTTCTATGATGGAGAACACAACGATGGGGCAGGGAACGCTTTTGATGGACCAGGTGGTGCTCTGGCTCATGCGTTTTTCCCATTCCGCGGTGAAGCTCATTTTGACATGTCTGAGCGCTGGACGCTGAGCGGTTATAAAGGACACAACCTATTCCTGGTGACGGCGCACGAGATTGGCCACACTCTGGGTTTGGTGCACTCGCCGGTCCGTCACGCTCTCATGTCCCCGTACTATAAGAAGATCAGCTCCAATGCTGTGCTCAGCTGGGACGACATCACTGCCGTACAACAGCTCTATGGCAAACCACCCGGGGACACAGTGCAGCAGTTGGTGGGGCGGGCTTTAAGATGGACCATGCAGGACTGGCAGATTTCTCAAGACCCCAGAGAAAGTTCCCTCACACCCAATTACTGTCACGGTTTCTTTGATGCCATCACCACAGatgaGAATGGGGCCGTGCTGGTGTTCCAGGGCTATCGTTTCTGGTCGGTGTCTAACGGCAGTGTGAGCGATCCTTGTCTGCTGCAGACCCGCTGGCCACAGCTGTCTGTCACCATTGAAGCTGCTGCTTTCAATCCACTAGACAGAAAGCTATACTTCTTTAAAGCTTATCATCAATGA
>TCONS_00017620
CAGAGATATTCCGGTTGATAGTGTTCAGCATCTCTGAAAGgtagttttaaaaaaagtgtgcCCATTGCTTTGTCACACAACAAAACAACTCCACTAACAGTACCAACAGTTTCACTTAATGCTaacttgtttaaattaaatgtgtacTGAAATTAGCTGAAAATACTAATTTTCTTGGACATAATCATTGATGTGAACAGCGTTTGCTTTATAGAGCTCTTTGACATTGGTTTTTCTTTGGCTTCTGTAACTGTGTATTATGGCAAGCGTAATAAATGTATATGCTCacctgagtaggataaactttttatctgatAAAGGTTTCAAGATTAGTAATTAGAATTAAATTAATAGGCCAGTTGTAGCACTTCTATTATATCGCTTTTGACTTAATAACAGACAATTTCGAGTTTACATCGAACATTTCTGAGGGgaaaaatgtcagaattgtgagtttgcATGACGCAATAAcggtttgtttttaaaattcagtGGCGGGAACGGGCTTCCACGGTGAAGCTATAAATCATGAGTGTAAAGTAGATGAGCCTCAGTTGACGCCCGTGCGTTTTGGAGGCGGAACGAGCCAAAGAATTTATAGTGAACCGCTCTCTCTTACCTCACTGATGTCAGAGCAGTCCAGCTGTGCGTTACTCgctgtatatatttattcttatatttaaatgaatgtaacTTGATTTACCACATTTCAGCGTTCATAAATGATGTTTCTGCTGCTGCTGTGTGTTCAGACCTCTTGCAGCTCTCCAATCTCCTCACCTGCTCAGGGCTTTCTGGAGCAGTATGGATACCTGTATAAAGACAACGAAACTTACCGCACAGCTGAAGTCAAGACTGCTATCAGAGAGTTTCAGTGGTTGTCTTGGCTGCCTGTCACTGGCCATCTGGACGCTGCGACTTTGGAAAAGATGGCATCGCCCCGCTGTGGGGTTACAGACGCGGGTAGCATTGATGCCTGGCAGGACAGAATAAACGGCATCTTTACGGGCAGACATGGGCAACATCTCCGTAAGAAGCGTTACACTCAGTTAGGGGAGAAATGGCAGAAGAAACAGCTGAGCTACCGCATCCTGAACTGGCCCCGGAGCCTTTCTACCAGTCAGGTGCATCTGGCAGTGAGTGCAGCGTTCCAGCTGTGGAGTAATGCCTCCGGACTGCAGTTCCTGGAGCTCCATCAGGGGCCAGCAGACATACGACTCGCCTTCTATGATGGAGAACACAACGATGGGGCAGGGAACGCTTTTGATGGACCAGGTGGTGCTCTGGCTCATGCGTTTTTCCCATTCCGCGGTGAAGCTCATTTTGACATGTCTGAGCGCTGGACGCTGAGCGGTTATAAAGGACACAACCTATTCCTGGTGACGGCGCACGAGATTGGCCACACTCTGGGTTTGGTGCACTCGCCGGTCCGTCACGCTCTCATGTCCCCGTACTATAAGAAGATCAGCTCCAATGCTGTGCTCAGCTGGGACGACATCACTGCCGTACAACAGCTCTATGGCAAACCACCCGGGGACACAGTGCAGCAGTTGGTGGGGCGGGCTTTAAGATGGACCATGCAGGACTGGCAGATTTCTCAAGACCCCAGAGAAAGTTCCCTCACACCCAATTACTGTCACGGTTTCTTTGATGCCATCACCACAGatgaGAATGGGGCCGTGCTGGTGTTCCAGGGCTATCGTTTCTGGTCGGTGTCTAACGGCAGTGTGAGCGATCCTTGTCTGCTGCAGACCCGCTGGCCACAGCTGTCTGTCACCATTGAAGCTGCTGCTTTCAATCCACTAGACAGAAAGCTATACTTCTTTAAAGGACGTCGGATGTGGCGTTACTCCGGATCTAATCTGGACCCTGGATTCCCCAAGAGGAGCAGTGCATTGGGTTTGCCTAAACACGTAGACTGTGCCTTCTTTTACCAGCCTCTGGGTCAACTGGTGCTCTTTAAAGGATCCCGCTACCTCGTCCTGAACCCCAGGTCTCTCAGCATGGAGCTGTACTACCCTCGTCCTCTGAGGGACTGGAAGGGGGTCCCGCGAGAGGTAAACGGGGCCCTGACAAGGCCTGACGGGATGCTTTATTTCTTTAAAGAGCAGCAGTATTGGAGGTTAGACATTGGGAAGCTGCGCATTACTGCGGCTGGACGGTGGGCAGACAGCCTGCAGTGGATCGGCTGCCAGAAAACTCCATCATTACTGGACAATGAGCTGTGA
>TCONS_00017621
TTTTGACTTAATAACAGACAATTTCGAGTTTACATCGAACATTTCTGAGGGgaaaaatgtcagaattgtgagtttgcATGACGCAATAAcggtttgtttttaaaattcagtGGCGGGAACGGGCTTCCACGGTGAAGCTATAAATCATGAGTGTAAAGTAGATGAGCCTCAGTTGACGCCCGTGCGTTTTGGAGGCGGAACGAGCCAAAGAATTTATAGTGAACCGCTCTCTCTTACCTCACTGATGTCAGAGCAGTCCAGCTGTGCGTTACTCgctgtatatatttattcttatatttaaatgaatgtaacTTGATTTACCACATTTCAGCGTTCATAAATGATGTTTCTGCTGCTGCTGTGTGTTCAGACCTCTTGCAGCTCTCCAATCTCCTCACCTGCTCAGGGCTTTCTGGAGCAGTATGGATACCTGTATAAAGACAACGAAACTTACCGCACAGCTGAAGTCAAGACTGCTATCAGAGAGTTTCAGTGGTTGTCTTGGCTGCCTGTCACTGGCCATCTGGACGCTGCGACTTTGGAAAAGATGGCATCGCCCCGCTGTGGGGTTACAGACGCGGGTAGCATTGATGCCTGGCAGGACAGAATAAACGGCATCTTTACGGGCAGACATGGGCAACATCTCCGTAAGAAGCGTTACACTCAGTTAGGGGAGAAATGGCAGAAGAAACAGCTGAGCTACCGCATCCTGAACTGGCCCCGGAGCCTTTCTACCAGTCAGGTGCATCTGGCAGTGAGTGCAGCGTTCCAGCTGTGGAGTAATGCCTCCGGACTGCAGTTCCTGGAGCTCCATCAGGGGCCAGCAGACATACGACTCGCCTTCTATGATGGAGAACACAACGATGGGGCAGGGAACGCTTTTGATGGACCAGGTGGTGCTCTGGCTCATGCGTTTTTCCCATTCCGCGGTGAAGCTCATTTTGACATGTCTGAGCGCTGGACGCTGAGCGGTTATAAAGGACACAACCTATTCCTGGTGACGGCGCACGAGATTGGCCACACTCTGGGTTTGGTGCACTCGCCGGTCCGTCACGCTCTCATGTCCCCGTACTATAAGAAGATCAGCTCCAATGCTGTGCTCAGCTGGGACGACATCACTGCCGTACAACAGCTCTATGGTAAACAAAC

Function

symbol description
mmp28 Predicted to enable metalloendopeptidase activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in extracellular matrix. Predicted to be active in extracellular space. Orthologous to human MMP28 (matrix metallopeptidase 28).

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0006508 proteolysis biological_process
GO:0030574 collagen catabolic process biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-100226-1 Predicted to enable metalloendopeptidase activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in extracellular matrix. Predicted to be active in extracellular space. Orthologous to human MMP28 (matrix metallopeptidase 28).

Ensembl:

ensembl_id ENSDARG00000059029

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017619 False 1844 mRNA 0.47 8 1778773 1822548
TCONS_00017620 False 2228 mRNA 0.48 8 1804823 1822548
TCONS_00017621 True 1149 mRNA 0.50 5 1812565 1822166

Neighbor

gene id symbol gene type direction distance location
XLOC_008920 bud23 coding downstream 13636 1749843 ~ 1765137 (-)
XLOC_008919 stx1a coding downstream 31810 1734444 ~ 1746963 (-)
XLOC_008918 rabgef1l coding downstream 45514 1718668 ~ 1733259 (-)
XLOC_008917 sptssb coding downstream 91569 1679962 ~ 1687204 (-)
XLOC_008916 ppm1lb coding downstream 127007 1630815 ~ 1651766 (-)
XLOC_008922 taf15 coding upstream 2624 1825172 ~ 1844048 (-)
XLOC_008923 porb coding upstream 24587 1847135 ~ 1885247 (-)
XLOC_008924 dock10 coding upstream 74827 1897375 ~ 2010926 (-)
XLOC_008925 taar12m coding upstream 228580 2051128 ~ 2052259 (-)
XLOC_008926 shox2 coding upstream 359555 2182103 ~ 2188422 (-)
XLOC_008910 LO017713.1 non-coding downstream 456867 1321790 ~ 1321906 (-)
XLOC_008908 NA non-coding downstream 635704 1140445 ~ 1143069 (-)
XLOC_008903 NA non-coding downstream 770414 1007600 ~ 1008359 (-)
XLOC_008902 NA non-coding downstream 785186 986144 ~ 993587 (-)
XLOC_008899 NA non-coding downstream 877894 899089 ~ 900879 (-)
XLOC_008927 AL954387.2 non-coding upstream 443421 2265969 ~ 2266083 (-)
XLOC_008928 NA non-coding upstream 501118 2323666 ~ 2328284 (-)
XLOC_008932 NA non-coding upstream 776256 2598804 ~ 2611170 (-)
XLOC_008933 NA non-coding upstream 795731 2618279 ~ 2625928 (-)
XLOC_008940 CABZ01086049.1 non-coding upstream 913835 2736383 ~ 2736498 (-)

Expression


Co-expression Network