XLOC_008922 (taf15)


Basic Information

Item Value
gene id XLOC_008922
gene name taf15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1825172 ~ 1844048 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017622
AAAGTTCGTACCACTTTTCAGGAGACGGGGGTTTTCATCAAAATACATTTCACTTTATGTACTTTGTAACTTTATAGTTTGCATTGCTCTGTTGTCCGACgtgcaataaaacaatatttatgtaTTTCTCTGCTATGTTTTATTCGCTGCGGGTGCTAAATAAACGAACTCAGTTTAGGCATTCCCGCTAAGTTGACGGTACTCTCCAGTGTCGGGTCAAGGTTCATAAGAGCTGCAGTGCGTGTTTCGCTCGTGCCgggtttttaatttctttattttggaATAGGtggtcatttcattttatttccctGCGAACGATGGCCTCAGattCAGGCTACGGTCACCCTGGCTCTCAGCAGAGCTATGGCGGATATGGTGGATCCCAGGGTTATCAAGGTGGACAGcaGGGATATGGACAGGGTAATGGAAGCGGAAGTTACAGCGAACAGAGCTATGGTGGTTATGGGCAGTCTGGTGGAGACAGTTATGGTCAGTCATCGCAGGGATATTCCTCTGGTGGTTATGGCCAACAGCAGCAGGGCTCTGACAGTTATGGACAACAGGGTTCTGAATCCTCGTCTGGGTATGGGGATAAATCCTATGGCCAGCAGCGCTCTTACGGACAGCAGTcaagtggtggtggtggtggaggaGGGTATGGGCAATCCAGTGGCTCATATGGAGGCTCTCAAGGTGGCTACGGGAGACGCAATGATGGGGACAGCCGCAgatttggagatgatgaaggctCTGACCGGTCTGAGGGTTACAGGGGTCGGGGGCGTGGAGGTTATGACCGCGGAGGCTATGACAGAGGTGGCCGCGGAGGCCCACCCTCCGGTATGGGTGGTGGTGACCGTGGTGGCTACAAAAATTACGGTGGACCCAAAGACTACGGCCAGAAGGATGACGATGGCGATCAGGATAACTCGGACAATAATACCATCTTTGTCCAGGGTCTTGGGGAGGATGTCAATGCTCAGGAAGTGGGTGACTATTTCAAGCAAATCGGGATCATAAAGGTCAACAAGAAGACTGGCAAGCCTATGATCAATCTGTACTCTGATAAAGCCACGGGACGCCTGAAGGGTGAAGCCACGGTCTCATTTGATGACCCGCCCTCGGCCAAAGCAGCCATTGATTGGTTTGATGGAAAAGAGTTTAATGGTAGACCCATCAAGGTGTCGTTTGCTACCAGAAGGGCTGAGTTCACTCAGAGAGGAGGTGGAAGCGGTGGCCGAGGGGGTCGTGGTGGTTTTCGAGGCcgaggtggtggtggtggtggtggcggCGGCGGCGGCTTTGGTGGTGGTCCGTCATTTGATGTCCGGGGTGGAGACTGGCCTTGTCCTAACAGTTCTTGTGGCAACATGAACTTCGCCAGGCGATATGAATGCAACCGGTGTGGTACACCGAAGCCAGAAGGGGACAGTTTCGGTGGTGGTGGCGGCGGCAGTGATCGCGGCAGCCGCGGTGGCTATGGAGGAGATCACGGGGACCGCGGCGGCGGCTTCAGAGGTGGGAGAGGAGGTGGATTTAGAGGAGGAGATCGTGGAGGCGGAGGATACAAAATGGGTGGAAGGGGAGACCACAGAGATGATAGACGTGGCCGGCCATACTGAAGACCTGTTTAGATGCCATTCCAGACCTTTATTGCGGGGTGGGGGTACGGGGGGTTTGGGGAGAGGTTCGTGTCTGCATACCTTTGTTGCATGAGTGTCCTGCATATACTGTCTGAGCGGAGCCGTTTTTCCCATACATGTTCAATCTACTGTGAGGATGATGATCTGAGCTGCAGCATTGAAAACCTTCAGTCCTGTAAGGAGTTTCCAAAACCCGGCGACAGATCCGCTTTAAAGGATGTTTTGCTCTAGTATGATGGGGAAATTGGGCCAGATgttatttttgttactttttaattTCCTAACTGTTCAATCCGgcgtttagtgtgtgtgtgtgatggattTGTGAAATGCTTATGATTTTGTAAAAATCAATCAACACAAACTGTTTTACtggtttcttttgtttgtttttttccccttttgcaaaaaatattaaacacccTTTTGATCTTAATGTG
>TCONS_00017623
GGAAGGAAAGCGTGCGCTCGTCTACACGATGGTGGTGACCGTGGTGGCTACAAAAATTACGGTGGACCCAAAGACTACGGCCAGAAGGATGACGATGGCGATCAGGATAACTCGGACAATAATACCATCTTTGTCCAGGGTCTTGGGGAGGATGTCAATGCTCAGGAAGTGGGTGACTATTTCAAGCAAATCGGGATCATAAAGGTCAACAAGAAGACTGGCAAGCCTATGATCAATCTGTACTCTGATAAAGCCACGGGACGCCTGAAGGGTGAAGCCACGGTCTCATTTGATGACCCGCCCTCGGCCAAAGCAGCCATTGATTGGTTTGATGGAAAAGAGTTTAATGGTAGACCCATCAAGGTGTCGTTTGCTACCAGAAGGGCTGAGTTCACTCAGAGAGGAGGTGGAAGCGGTGGCCGAGGGGGTCGTGGTGGTTTTCGAGGCcgaggtggtggtggtggtggtggcggCGGCGGCGGCTTTGGTGGTGGTCCGTCATTTGATGTCCGGGGTGGAGACTGGCCTTGTCCTAACAGTTCTTGTGGCAACATGAACTTCGCCAGGCGATATGAATGCAACCGGTGTGGTACACCGAAGCCAGAAGGGGACAGTTTCGGTGGTGGTGGCGGCGGCAGTG
>TCONS_00017624
GTGGCTACAAAAATTACGGTGGTAAGTGACGAGCATCAGAACTGTCTCAGTGGGGGAAAGCAAATAAGTGCAGAAAGATTTAGCTGAACAAATGAACTCTTGAGCCACCATTTCTTTACTTTGTCAACCCAAAGGAACATCACCTTATTGTTTATTGCTGTTCTCTCTGGTAGTGCTTTTTGTGAGCTAAACTGCTCTTTAATGAAAAAGGTGCTGTTGCATGAGGAAAAGTAGCTTTAGATGCCAGTGTTCGGGATGCCAGCTGCACATGGGGAAGAAGAAACATTAGATCAATACTTGGATTTCTTATTTTGATTAGACTCAGTTTGTGCTGGTGTACAGAGGTGTTGGAAATGCTGCAGCATTTTTTGGATGCTCTGGTGAAATAgctaaatgtttcatttttaattgaaaaaaggtCAAGTCTGCATAGCcaaacagattttatttattaattattggtAGACTTTAGTAATTAGGACTCATGCCTCTGTGATGTTTCTTTCTCAAGTTCTTACATTGTTTTTTCCCTTTCATGTCTTGTTCTTTTTAGGACCCAAAGACTACGGCCAGAAGGATGACGATGGCGATCAGGATAACTCGGACAATAATACCATCTTTGTCCAGGGTCTTGGGGAGGATGTCAATGCTCAGGAAGTGGGTGACTATTTCAAGCAAATCGGGATCATAAAGGTCAACAAGAAGACTGGCAAGCCTATGATCAATCTGTACTCTGATAAAGCCACGGGACGCCTGAAGGGTGAAGCCACGGTCTCATTTGATGACCCGCCCTCGGCCAAAGCAGCCATTGATTGGTTTGATGGAAAAGAGTTTAATGGTAGACCCATCAAGGTGTCGTTTGCTACCAGAAGGGCTGAGTTCACTCAGAG
>TCONS_00017625
CAAGGTTCATAAGAGCTGCAGTGCGTGTTTCGCTCGTGCCgggtttttaatttctttattttggaATAGGtggtcatttcattttatttccctGCGAACGATGGCCTCAGattCAGGCTACGGTCACCCTGGCTCTCAGCAGAGCTATGGCGGATATGGTGGATCCCAGGGTTATCAAGGTGGACAGcaGGGATATGGACAGGGTAATGGAAGCGGAAGTTACAGCGAACAGAGCTATGGAGACAGTTATGGTCAGTCATCGCAGGGATATTCCTCTGGTGGTTATGGCCAACAGCAGCAGGGCTCTGACAGTTATGGACAACAGGGTTCTGAATCCTCGTCTGGGTATGGGGATAAATCCTATGGCCAGCAGCGCTCTTACGGACAGCAGTcaagtggtggtggtggtggaggaGGGTATGGGCAATCCAGTGGCTCATATGGAGGCTCTCAAGGTGGCTACGGGAGACGCAATGATGGGGACAGCCGCAgatttggagatgatgaaggctCTGACCGGTCTGAGGGTTACAGGGGTCGGGGGCGTGGAGGTTATGACCGCGGAGGCTATGACAGAGGTGGCCGCGGAGGCCCACCCTCCGGTATGGGTGGTGGTGACCGTGGTGGCTACAAAAATTACGGTGGACCCAAAGACTACGGCCAGAAGGATGACGATGGCGATCAGGATAACTCGGACAATAATACCATCTTTGTCCAGGGTCTTGGGGAGGATGTCAATGCTCAGGAAGTGGGTGACTATTTCAAGCAAATCGGGATCATAAAGGTCAACAAGAAGACTGGCAAGCCTATGATCAATCTGTACTCTGATAAAGCCACGGGACGCCTGAAGGGTGAAGCCACGGTCTCATTTGATGACCCGCCCTCGGCCAAAGCAGCCATTGATTGGTTTGAT
>TCONS_00017626
TGTCGGGTCAAGGTTCATAAGAGCTGCAGTGCGTGTTTCGCTCGTGCCgggtttttaatttctttattttggaATAGGtggtcatttcattttatttccctGCGAACGATGGCCTCAGattCAGGCTACGGTCACCCTGGCTCTCAGCAGAGCTATGGCGGATATGGTGGATCCCAGGGTTATCAAGGTGGACAGcaGGGATATGGACAGGGAGACAGTTATGGTCAGTCATCGCAGGGATATTCCTCTGGTGGTTATGGCCAACAGCAGCAGGGCTCTGACAGTTATGGACAACAGGGTTCTGAATCCTCGTCTGGGTATGGGGATAAATCCTATGGCCAGCAGCGCTCTTACGGACAGCAGTcaagtggtggtggtggtggaggaGGGTATGGGCAATCCAGTGGCTCATATGGAGGCTCTCAAGGTGGCTACGGGAGACGCAATGATGGGGACAGCCGCAgatttggagatgatgaaggctCTGACCGGTCTGAGGGTTACAGGGGTCGGGGGCGTGGAGGTTATGACCGCGGAGGCTATGACAGAGGTGGCCGCGGAGGCCCACCCTCCGGTATGGGTGGTGGTGACCGTGGTGGCTACAAAAATTACGGTGGACCCAAAGACTACGGCCAGAAGGATGACGATGGCGATCAGGATAACTCGGACAATAATACCATCTTTGTCCAGGGTC
>TCONS_00017627
GGGGACAGCCGCAgatttggagatgatgaaggctCTGACCGGTCTGAGGGTTACAGGGGTCGGGGGCGTGGAGGTTATGACCGCGGAGGCTATGACAGAGGTGGCCGCGGAGGCCCACCCTCCGGTATGGGGTGTCAAAGTGAGTGAAATTAAAGTTGGACCTCATAATGGACCTCACTCATAATGGAAGGAAAGCGTGCGCTCGTCTACACGAGTGCGTCGACAGTTAGCTTCAATTGATGCTAATCTAAAGAGGGAGCAGGGAGGTTGTTCTCCGTTGCTCTTCTCTGGTTTTAGTTGCATCGGTCTCAGAGTGCACGCTCAATCTCAATCTTAAACCCAAAATTCTAATTTGCCTAATCGGTTTCGATCTGAAATGATTCATGCACATTGGGCCGTCATCT

Function

symbol description
taf15 Predicted to enable RNA binding activity and transcription coregulator activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in chondrosarcoma and extraskeletal myxoid chondrosarcoma. Orthologous to human TAF15 (TATA-box binding protein associated factor 15).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko05202 Transcriptional misregulation in cancer
ko03021 Transcription machinery
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-061215-102 Predicted to enable RNA binding activity and transcription coregulator activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in chondrosarcoma and extraskeletal myxoid chondrosarcoma. Orthologous to human TAF15 (TATA-box binding protein associated factor 15).

Ensembl:

ensembl_id ENSDARG00000070019

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017622 False 2083 mRNA 0.50 16 1825172 1844048
TCONS_00017623 False 640 mRNA 0.55 8 1829126 1835189
TCONS_00017624 False 890 lncRNA 0.42 4 1830270 1834822
TCONS_00017625 False 913 mRNA 0.53 11 1830428 1843831
TCONS_00017626 False 694 mRNA 0.54 10 1831164 1843839
TCONS_00017627 True 404 processed_transcript 0.51 2 1834971 1837883

Neighbor

gene id symbol gene type direction distance location
XLOC_008921 mmp28 coding downstream 2624 1778773 ~ 1822548 (-)
XLOC_008920 bud23 coding downstream 60035 1749843 ~ 1765137 (-)
XLOC_008919 stx1a coding downstream 78209 1734444 ~ 1746963 (-)
XLOC_008918 rabgef1l coding downstream 91913 1718668 ~ 1733259 (-)
XLOC_008917 sptssb coding downstream 137968 1679962 ~ 1687204 (-)
XLOC_008923 porb coding upstream 3087 1847135 ~ 1885247 (-)
XLOC_008924 dock10 coding upstream 53327 1897375 ~ 2010926 (-)
XLOC_008925 taar12m coding upstream 207080 2051128 ~ 2052259 (-)
XLOC_008926 shox2 coding upstream 338055 2182103 ~ 2188422 (-)
XLOC_008927 AL954387.2 coding upstream 421921 2265969 ~ 2266083 (-)
XLOC_008910 LO017713.1 non-coding downstream 503266 1321790 ~ 1321906 (-)
XLOC_008908 NA non-coding downstream 682103 1140445 ~ 1143069 (-)
XLOC_008903 NA non-coding downstream 816813 1007600 ~ 1008359 (-)
XLOC_008902 NA non-coding downstream 831585 986144 ~ 993587 (-)
XLOC_008899 NA non-coding downstream 924293 899089 ~ 900879 (-)
XLOC_008928 NA non-coding upstream 479618 2323666 ~ 2328284 (-)
XLOC_008932 NA non-coding upstream 754756 2598804 ~ 2611170 (-)
XLOC_008933 NA non-coding upstream 774231 2618279 ~ 2625928 (-)
XLOC_008940 CABZ01086049.1 non-coding upstream 892335 2736383 ~ 2736498 (-)

Expression


Co-expression Network