XLOC_008925 (taar12m)


Basic Information

Item Value
gene id XLOC_008925
gene name taar12m
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2051128 ~ 2052259 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017635
tttttacagtgcatattatgtaaatgtatgtatattgCTATGTTCATTTTGTACAACTGACTGATTTGTGTGCAAATCTGACTTATGTTCATCTATCCAGTTGACAAAATGGCAGCAAACGAGACTGATGTGTATGCTGAAAATGTGTTCCTCTGCTTTCCGCTTCGCCTAGACTCCTGCCTCAGTGCGCAGCGCCTTACTACAGTGAAGGTGGCTATGTACATATTAATGCTTCTCATTATATTTCTAACAGTTTTCGGCAACCTGCTGGTCGTCGTCTCCATCTCATACTTTAAACATCTGCAGTCTCCAACTCATCTGATCGTTCAGTCTCTGGCTGCATGCGACTGTCTCCTGGGCTCTTTGGTCATGCCTTACAGCATGGTGAGATCTATTGAAGGGTGCTGGTATTTAGGAGACGTTATTTGTAAAGTGCATTCAAGCTTGGACATGACTCTCTCAATCTCTTCTAAAATGCACCTGAGTTTAATATCCGTGGACAGGTACTGGGCAATCTGTGACCCTTTAATGTACAGAACGAGAGTCACAAATTACAGCATAACTGTGTTTATTATGTGTGCGTGGCTGTTTGCGTTTGTGTACAGCTTTTCCATTGTGTTTTCAGAGGTGAATCTGATAGGTCTGGAAGTACTCGTCTTACAAATATCCTGTTTGGGAAGTTGCGTACTTTTATTCAACAAACCCTCAGCTCTTATTTGCTCGATTCTGACATTTTTCCTGCCCGGTGCTATTATGAGCTCTCTGTATGTAAAGATCTTTCGCGTTGCGAGCAAACACGCAAAGGTTTTATCAGAAAGAGTCTCTGTGTTGGAGATTAAGAGCCAGACGTACGCGCAGAGAGAAAGAAAGGCTGCCAAAATAGTGGCCATTGTCGTAGGTGCTTTTTTGTTATGCTGGCTGCCTTTTTTTGTGGCCACTGCTCTCGACCCCTTCCTCGATTTCTGGACTCCGGCTGATGTCTTTGATGCTTTGGTTTGGTTCGGGTATTTTAATTCCACCTGTAACCCATTGATATATGGCTTTTTTTATCCACGCTTTCAGAAGGCATTCAAAATCCTGATGTCGACTGTTATGTGTGGATCCAGCAGCTCCAGAACACTGGCGTTTGGAT

Function

symbol description
taar12m Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Orthologous to human TAAR2 (trace amine associated receptor 2) and TAAR3P (trace amine associated receptor 3, pseudogene).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007187 G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger biological_process
GO:0007198 adenylate cyclase-inhibiting serotonin receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0030425 dendrite cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function
GO:0051378 serotonin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100506-1 Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Orthologous to human TAAR2 (trace amine associated receptor 2) and TAAR3P (trace amine associated receptor 3, pseudogene).

Ensembl:

ensembl_id ENSDARG00000074325

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017635 True 1132 mRNA 0.43 1 2051128 2052259

Neighbor

gene id symbol gene type direction distance location
XLOC_008924 dock10 coding downstream 40202 1897375 ~ 2010926 (-)
XLOC_008923 porb coding downstream 165881 1847135 ~ 1885247 (-)
XLOC_008922 taf15 coding downstream 207080 1825172 ~ 1844048 (-)
XLOC_008921 mmp28 coding downstream 228580 1778773 ~ 1822548 (-)
XLOC_008920 bud23 coding downstream 285991 1749843 ~ 1765137 (-)
XLOC_008926 shox2 coding upstream 129844 2182103 ~ 2188422 (-)
XLOC_008927 AL954387.2 coding upstream 213710 2265969 ~ 2266083 (-)
XLOC_008928 NA coding upstream 271407 2323666 ~ 2328284 (-)
XLOC_008929 neu4 coding upstream 437945 2490204 ~ 2497568 (-)
XLOC_008930 srprb coding upstream 458502 2510761 ~ 2519640 (-)
XLOC_008910 LO017713.1 non-coding downstream 729222 1321790 ~ 1321906 (-)
XLOC_008908 NA non-coding downstream 908059 1140445 ~ 1143069 (-)
XLOC_008903 NA non-coding downstream 1042769 1007600 ~ 1008359 (-)
XLOC_008902 NA non-coding downstream 1057541 986144 ~ 993587 (-)
XLOC_008899 NA non-coding downstream 1150249 899089 ~ 900879 (-)
XLOC_008932 NA non-coding upstream 546545 2598804 ~ 2611170 (-)
XLOC_008933 NA non-coding upstream 566020 2618279 ~ 2625928 (-)
XLOC_008940 CABZ01086049.1 non-coding upstream 684124 2736383 ~ 2736498 (-)

Expression


Co-expression Network