XLOC_008929 (neu4)


Basic Information

Item Value
gene id XLOC_008929
gene name neu4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2490204 ~ 2497568 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017641
CCTTGCGACCTCTTGCTCTCACTCATCTGACACTCATCTCATTACTCTGCATTAGAGCGTGTCCTGCCTGTTTGCTATATATGAGGCTATGGGGTCTCAATACTACCCAGCACGATCCATACTTTTCCAAAAGGAGCCGAGTGGAGTTACATACCGTGTGCCAGCTCTGATCTACATCCCTCGCTCCAGCTGTTTCTTGGCCTTCTGTGAGGAGAGACTGACTCCAGCAGACGCTCAAGCACATCTGCTGGTCATGCGCAAAGGGACGTTTTACAAAAACTATGTGGAATGGAAAGACATGGAGGTGCTCAGTACAGCTCGACTGGAGGGCTACCGATCCATGAACCCATGCCCCGTTTATGACGAGTTTACTGACACGATCTTCTTGTTTTTTATTGCTGTCCTGGGGCACACTTCTGAGTCTTATCAGCTAATTACAGGAAAAAACGTGACGCGTCTTTGTTACGTTTCCAGCTGTGACCAGGGGGACACCTGGAGCAACGCTACAGATCTCACCAGGACACTGATAGGGGACACTATAAAAGAGTGGGCCACTTTTGCTGTTGGTCCAGGTCACGGAACGCAGTTGAAATCTGGAAGGCTAATAATCCCTGCATATGCCTACCACATTGACTGCAGAAACTGCTTCGGCAAGACGTGCAAGACCTCGCCACACtcgttttgtttttacagtgacaCACATGGAAACGTGTGGCATTTTGGACAGGCGTTGTCTGAGCCTAACAGTGTGGAGTGTCAGATGGTGTCAGTGGATGAAGAAGATGGAGTCAACCTTTTGTACTGTAATGCGCGTAGCATTTCAGGCTACCGGGTGCAAGCTGTCAGCTTTGATCATGGAACTTTCTTTCAAGATGGCCAGCTGGTGCACAAACTACTGGAACCCAGAAACGGGTGCCATGGCAGCGTGATCGGATTTCCAGCCCCAATCTTCCAGCTCGAGCGGTTTAAGTCCATCTACAACTCACTTGAACTCAGCGCAGCTCCGAGGTCTCCAAAGAACTTCCTTCCACCAACATGGGTAGTATATAGTCACCCAACCTGTCCAAATTCCCGTCGTGACCTGGGGGTTTACCTCAGTCTTCTGCCTCGAGACCCAGACAGTTGGTCAGGACCTTGGATTATATATGACGGCCCTAGTGCATACTCAGACTTGGCGTATGTTGACCTGATGTCTTCTGATGCCGCAGGGGTCACCGTCTTTGCCTGTCTCTTTGAAAGCGGCACCAAGACAGCTTATGATGAGATTTCCTTCTGCATATTCACACTGTATGAGCTCATTGACCACCTTCCCCAAGACCAAGAAAAAACAACATTGCTGAAGAGGAAACGAATCTGGGAGCGCTGCTTTATCTGCTGATTATATGCCAATCTCTGTTGAGTAGAAATCAGA
>TCONS_00017642
CTATGGGGTCTCAATACTACCCAGCACGATCCATACTTTTCCAAAAGGAGCCGAGTGGAGTTACATACCGTGTGCCAGCTCTGATCTACATCCCTCGCTCCAGCTGTTTCTTGGCCTTCTGTGAGGAGAGACTGACTCCAGCAGACGCTCAAGCACATCTGCTGGTCATGCGCAAAGGGACGTTTTACAAAAACTATGTGGAATGGAAAGACATGGAGGTGCTCAGTACAGCTCGACTGGAGGGCTACCGATCCATGAACCCATGCCCCGTTTATGACGAGTTTACTGACACGATCTTCTTGTTTTTTATTGCTGTCCTGGGGCACACTTCTGAGTCTTATCAGCTAATTACAGGAAAAAACGTGACGCGTCTTTGTTACGTTTCCAGCTGTGACCAGGGGGACACCTGGAGCAACGCTACAGATCTCACCAGGACACTGATAGGGGACACTATAAAAGAGTGGGCCACTTTTGCTGTTGGTCCAGGTCACGGAACGCAGTTGAAATCTGGAAGGCTAATAATCCCTGCATATGCCTACCACATTGACTGCAGAAACTGCTTCGGCAAGACGTGCAAGACCTCGCCACACtcgttttgtttttacagtgacaCACATGGAAACGTGTGGCATTTTGGACAGGCGTTGTCTGAGCCTAACAGTGTGGAGTGTCAGATGGTGTCAGTGGATGAAGAAGATGGAGTCAACCTTTTGTACTGTAATGCGCGTAGCATTTCAGGCTACCGGGTGCAAGCTGTCAGCTTTGATCATGGAACTTTCTTTCAAGATGGCCAGCTGGTGCACAAACTACTGGAACCCAGAAACGGGTGCCATGGCAGCGTGATCGGATTTCCAGCCCCAATCTTCCAGCTCGAGCGGTTTAAGTCCATCTACAACTCACTTGAACTCAGCGCAGCTCCGAGGTCTCCAAAGAACTTCCTTCCACCAACATGGGTAGTATATAGTCACCCAACCTGTCCAAATTCCCGTCGTGACCTGGGGGTTTACCTCAGTCTTCTGCCTCGAGACCCAGACAGTTGGTCAGGACCTTGGATTATATATGACGGCCCTAGTGCATACTCAGACTTGGCGTATGTTGACCTGATGTCTTCTGATGCCGCAGGGGTCACCGTCTTTGCCTGTCTCTTTGAAAGCGGCACCAAGACAGCTTATGATGAGATTTCCTTCTGCATATTCACACTGTATGAGCTCATTGACCACCTTCCCCAAGACCAAGAAAAAACAACATTGCTGAAGAGGAAACGAATCTGGGAGCGCTGCTTTATCTGCTGATT

Function

symbol description
neu4 Enables exo-alpha-sialidase activity. Acts upstream of or within ganglioside metabolic process. Located in endoplasmic reticulum. Is expressed in several structures, including heart; integument; lens; pleuroperitoneal region; and solid lens vesicle. Orthologous to human NEU4 (neuraminidase 4).

GO:

id name namespace
GO:0009313 oligosaccharide catabolic process biological_process
GO:0006689 ganglioside catabolic process biological_process
GO:0001573 ganglioside metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-125 Enables exo-alpha-sialidase activity. Acts upstream of or within ganglioside metabolic process. Located in endoplasmic reticulum. Is expressed in several structures, including heart; integument; lens; pleuroperitoneal region; and solid lens vesicle. Orthologous to human NEU4 (neuraminidase 4).

Ensembl:

ensembl_id ENSDARG00000057677

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017641 False 1411 mRNA 0.49 4 2490204 2497568
TCONS_00017642 True 1294 mRNA 0.49 3 2490235 2493771

Neighbor

gene id symbol gene type direction distance location
XLOC_008928 NA coding downstream 161920 2323666 ~ 2328284 (-)
XLOC_008927 AL954387.2 coding downstream 224121 2265969 ~ 2266083 (-)
XLOC_008926 shox2 coding downstream 301782 2182103 ~ 2188422 (-)
XLOC_008925 taar12m coding downstream 437945 2051128 ~ 2052259 (-)
XLOC_008924 dock10 coding downstream 479278 1897375 ~ 2010926 (-)
XLOC_008930 srprb coding upstream 13193 2510761 ~ 2519640 (-)
XLOC_008931 dnajc30b coding upstream 92381 2589949 ~ 2596125 (-)
XLOC_008932 NA coding upstream 101236 2598804 ~ 2611170 (-)
XLOC_008933 NA coding upstream 120711 2618279 ~ 2625928 (-)
XLOC_008934 cldnj coding upstream 133853 2631421 ~ 2632891 (-)
XLOC_008910 LO017713.1 non-coding downstream 1168298 1321790 ~ 1321906 (-)
XLOC_008908 NA non-coding downstream 1347135 1140445 ~ 1143069 (-)
XLOC_008903 NA non-coding downstream 1481845 1007600 ~ 1008359 (-)
XLOC_008940 CABZ01086049.1 non-coding upstream 238815 2736383 ~ 2736498 (-)
XLOC_008942 NA non-coding upstream 315948 2813516 ~ 2816142 (-)
XLOC_008946 CABZ01086029.1 non-coding upstream 420689 2918257 ~ 2931021 (-)

Expression


Co-expression Network