XLOC_008931 (dnajc30b)


Basic Information

Item Value
gene id XLOC_008931
gene name dnajc30b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2589949 ~ 2596125 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017645
ccTGTGTATTGCCGGATGCAGGTTCTGGTGTGTCCGTGGTAATGGCGGAGGTCACCGGCAGTGTGAGGAATGCAGTAAACAAGCTATCTGCCTTCAAAACGTTATTAagtcttcatcatcatcctcatggTCCTGTGGTGGATTCCCGCGCGTTGTGCCGTAAATCTAACGTGTGTGTCCACTGGTGTGCTGCTGACTGTGTGTGGGCGCTTCATAATAAACACGCACAGCTCTACAGACCCCAGATCAGTGGATGCTACACCCTTGTGTCTGCTAAACACTGGTGTCTGCTGTTAAGACCGGTGGGATCACGGTTATACAGCTGCAGGACAGCAGATGAGAGCTCTGGGCTGCTCCACCGCAGCCGCACCGCCTACTATGACATCCTGAAAGTGTCTCCGAACGCGACGCATGCGCAGATAAAGAGCGCCTATTATAAGCAGTCCTTCATTTACCACCCTGACCGGAACCGCAGTGAGGACGCGGCACGACAGTTCGCACTCGTAGCCGAAGCCTACAATGTGCTGGGCAGCAGCAGTCTCAGGAGGAGATACGACCGAGGCATCTTGACCCAGAAAGAGGTGCAGAGCTCAGGCAGACCTGCGGCTCCTCCGCCCCCCCGCCGCGCTCCGGCCTCCGGGAAAACGGCACACTTTGACTTTGACGCGTTTTACCAGGCGCATTACGGAGAGCAGCTGCAGAGAGAGAAACTGCAGAGACTCCGACAGCAGCAGATCCAGCAGCGGCGCATGGAGATGCAGAAACAGTGGAGACGGGAGCAAATCACCGGAGTCTCCGttatactgctgctgctgctcggAGGCGTCATCATCAACAGCCTCAAATCATGAGTCAGGGAATGTTTGGGGAGATTAAACCTTAAATGCATTAGAAAGTTTAAAGTGGTCATGtggggatagctcacccaaaaataaaataaaaattctgccatcatcaGATTATATTtgagttgaacacaaaggaagatgacCTGAAGAATGCTGGAGAATAAATTCAGCCACTGACTTCCAGAGTATTTTGTTGTTCCTATTATGGATATCAACAGCTGTTTTTtccccagcattcttcagaatatcttgccTTGTGTTCAATAAAAGTTTTGAcacacctgagggtgagtaaataattaagacatttttattttggggtgaactgtacctttaatcaTGGCAGAGTCTGTTTCCTATGGAAGCTTGTTcacagaataaaatatatatatatatatttaaaaacaaatgtaattcagtCTTTCTGGATACATgtcttactttaaaaaagtgtaaACTATCTAACttatgtttatttacaaagataCTATCACTGGTTTTCCGCACATGTAACCCCACCAATCCTATACCGACCAACCCGCtttgagctgggattgaaccggcgattctccacatgggagtcggttgcactaacaaggaggctaaagaccacagCCCTTAgcctctgtcgctagagcaccttcagAGTTTAGATGAGtcaggtttacctgcacagcacttcactagctggcctctgctacacacttaataaataataatgaagggAAATGACGCAGCACAACACCAGCAGGGGTCACTCTTACATCATTACACTAGTAatacagttttttgttgttgtttacacacaattatttGCACTTTAGACCAGGGGCG
>TCONS_00018809
TGTATTGCCGGATGCAGGTTCTGGTGTGTCCGTGGTAATGGCGGAGGTCACCGGCAGTGTGAGGAATGCAGTAAACAAGCTATCTGCCTTCAAAACGTTATTAagtcttcatcatcatcctcatggTCCTGTGGTGGATTCCCGCGCGTTGTGCCGTAAATCTAACGGTAAACAGCACTGTTAAACTGCTACAGTCAGAATCTGTAACCCGGTTAACAGTAAGTTGTGTGTCCACTGGTGTGCTGCTGACTGTGTGTGGGCGCTTCATAATAAACACGCACAGCTCTACAGACCCCAGATCAGTGGATGCTACACCCTTGTGTCTGCTAAACACTGGTGTCTGCTGTTAAGACCGGTGGGATCACGGTTATACAGCTGCAGGACAGCAGATGAGAGCTCTGGGCTGCTCCACCGCAGCCGCACCGCCTACTATGACATCCTGAAAGTGTCTCCGAACGCGACGCATGCGCAGATAAAGAGCGCCTATTATAAGCAGTCCTTCATTTACCACCCTGACCGGAACCGCAGTGAGGACGCGGCACGACAGTTCGCACTCGTAGCCGAAGCCTACAATGTGCTGGGCAGCAGCAGTCTCAGGAGGAGATACGACCGAGGCATCTTGACCCAGAAAGAGGTGCAGAGCTCAGGCAGACCTGCGGCTCCTCCGCCCCCCCGCCGCGCTCCGGCCTCCGGGAAAACGGCACACTTTGACTTTGACGCGTTTTACCAGGCGCATTACGGAGAGCAGCTGCAGAGAGAGAAACTGCAGAGACTCCGACAGCAGCAGATCCAGCAGCGGCGCATGGAGATGCAGAAACAGTGGAGACGGGAGCAAATCACCGGAGTCTCCGttatactgctgctgctgctcggAGGCGTCATCATCAACAGCCTCAAATCATGAGTCAGGGAATGTTTGGGGAGATTAAACCTTAAATGCATTAGAAAGTTTAAAGTGGTCATGtggggatagctcacccaaaaataaaataaaaattctgccatcatcaGATTATATTtgagttgaacacaaaggaagatgacCTGAAGAATGCTGGAGAATAAATTCAGCCACTGACTTCCAGAGTATTTTGTTGTTCCTATTATGGATATCAACAGCTGTTTTTtccccagcattcttcagaatatcttgccTTGTGTTCAATAAAAGTTTTGAcacacctgagggtgagtaaataattaagacatttttattttggggtgaactgtacctttaatcaTGGCAGAGTCTGTTTCCTATGGAAGCTTGTTcacagaataaaatatatatatatatatttaa

Function

symbol description
dnajc30b Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Williams-Beuren syndrome and nuclear type mitochondrial complex I deficiency. Orthologous to human DNAJC30 (DnaJ heat shock protein family (Hsp40) member C30).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-532 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Williams-Beuren syndrome and nuclear type mitochondrial complex I deficiency. Orthologous to human DNAJC30 (DnaJ heat shock protein family (Hsp40) member C30).

Ensembl:

ensembl_id ENSDARG00000079415

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017645 False 1682 mRNA 0.47 3 2589949 2596125
TCONS_00018809 True 1303 lncRNA 0.48 3 2590381 2596121

Neighbor

gene id symbol gene type direction distance location
XLOC_008930 srprb coding downstream 70309 2510761 ~ 2519640 (-)
XLOC_008929 neu4 coding downstream 92381 2490204 ~ 2497568 (-)
XLOC_008928 NA coding downstream 261665 2323666 ~ 2328284 (-)
XLOC_008927 AL954387.2 coding downstream 323866 2265969 ~ 2266083 (-)
XLOC_008926 shox2 coding downstream 401527 2182103 ~ 2188422 (-)
XLOC_008932 NA coding upstream 2679 2598804 ~ 2611170 (-)
XLOC_008933 NA coding upstream 22154 2618279 ~ 2625928 (-)
XLOC_008934 cldnj coding upstream 35296 2631421 ~ 2632891 (-)
XLOC_008935 cldne coding upstream 42759 2638884 ~ 2640966 (-)
XLOC_008936 cldnf coding upstream 54662 2650787 ~ 2652640 (-)
XLOC_008910 LO017713.1 non-coding downstream 1268043 1321790 ~ 1321906 (-)
XLOC_008908 NA non-coding downstream 1446880 1140445 ~ 1143069 (-)
XLOC_008903 NA non-coding downstream 1581590 1007600 ~ 1008359 (-)
XLOC_008940 CABZ01086049.1 non-coding upstream 140258 2736383 ~ 2736498 (-)
XLOC_008942 NA non-coding upstream 217391 2813516 ~ 2816142 (-)
XLOC_008946 CABZ01086029.1 non-coding upstream 322132 2918257 ~ 2931021 (-)

Expression


Co-expression Network