XLOC_008934 (cldnj)


Basic Information

Item Value
gene id XLOC_008934
gene name cldnj
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2631421 ~ 2632891 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017648
TTCTTGTCTCTGTGGTCTCCAGCCCGCTCCTCCATGGCTCTGCAGGTTTTGGGAATCACTCTGTCAATGATCGGCTTTGCGGGAACCATCATCATCTGCGCGCTGCCCATGTGGAAGGTGACCGCCTTCATTGGCACCAACATCGTGGTGGCTCAGGTGTTTTGGGAAGGCCTGTGGATGACCTGTGTGTATGAGCGCATCGGCCAGATGCAGTGCAAACTCTATGACGCCCTGCTGGATTTGGACCCCTTCCTGCAGGCGTCCCGCGGGCTCATAGTGACCACCATGGCTTTGGCCAGCTTGGCTTTCCTCATTTTTCTGATTGGGGCTGATTGCACTAACTGTCTGAGTAACCCACGGGCCAAAGGACGGATTGTGGTGGTCTCCGGCATCACCTTTATGCTTTCAGGACTGACCACTGTGGTGCCCGTGTCCTGGACAGCCGACTCCATTATAAGGGACTTTCACAATCCTGTAGTGCACGAGGCTTTAAAGAGGGAGATGGGAGCAGCTCTTTATGTGGGCTGGTTAACAGCCGGGTTTCTGTTTATTGGTGGAGCAATTCTGTGCACCAGTTGCCCACCGGAGCGGGACAACTATTTACCACGGTATACTTTAACAAAATCTGGCACTCACAGTGGCTATGCTGTAAAGAACTATGTCTGACAGGTAACACTCTCTAAAATAGTAGACTGAACAAAAATTATTGGATTTCCTAGTTTTTTTTTAGGGTAAACTAttcatttgggctgaatttaaacaaaaaaggtGATTTTAGTAATCAACTTAATTTGAGTGCGTTTATATTCAGCTCGtatgaattgtttgcaaccatttaccctaaaaaatgtagtaaatccaatgaatatttttttgtgtgtattgcaCAAGTGTTATGCTGCAtccacaccagacgcggaacgcgattcaagcgtgagtgatttacatgttaagtcaatgcaaacacgcaaatagacatcctgcgaatGGCGCGACGCAAATTGAACGTTTTGCGCGTTAAACAACCAGGAGCTTGCACTTGTGGaggtgtgattgtgacgtatcccctgttgtcggtgttccgggGGAAATCCTTCAGCCGAAACcgacaaaaagttcatcaaactgtgCTCAGcgcagtcagaagcaccgctgaaagcctccatcagccaggttaagtttctggaggagtttatgagctcacagagctggatgcacatctgaaagaatctagtggactcagacacgaccctaaacgtatcgacgctgtttttcagccttcataaagcacattaacactgttatttttttaataaaatccatgttagccatttagctatgaagctagagtcaccgggcagacagaagccctgcccatcacgcgaatccgcgtctgttctgaagtgaatttgacgcgcgaatgaagcagatttgatgtgcgaatgaagcgagtaacctcaaatgttcacgc

Function

symbol description
cldnj Predicted to enable structural molecule activity. Acts upstream of or within lifelong otolith mineralization. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in central nervous system; otic epithelium; otic vesicle; and ovary.

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0031174 lifelong otolith mineralization biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010328-10 Predicted to enable structural molecule activity. Acts upstream of or within lifelong otolith mineralization. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in central nervous system; otic epithelium; otic vesicle; and ovary.

Ensembl:

ensembl_id ENSDARG00000058880

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017648 True 1471 mRNA 0.47 1 2631421 2632891

Neighbor

gene id symbol gene type direction distance location
XLOC_008933 NA coding downstream 5493 2618279 ~ 2625928 (-)
XLOC_008932 NA coding downstream 20251 2598804 ~ 2611170 (-)
XLOC_008931 dnajc30b coding downstream 35296 2589949 ~ 2596125 (-)
XLOC_008930 srprb coding downstream 111781 2510761 ~ 2519640 (-)
XLOC_008929 neu4 coding downstream 133853 2490204 ~ 2497568 (-)
XLOC_008935 cldne coding upstream 5993 2638884 ~ 2640966 (-)
XLOC_008936 cldnf coding upstream 17896 2650787 ~ 2652640 (-)
XLOC_008937 cldna coding upstream 22675 2655566 ~ 2657508 (-)
XLOC_008938 si:ch211-235m3.5 coding upstream 67755 2700646 ~ 2726662 (-)
XLOC_008939 ppp5c coding upstream 94779 2727670 ~ 2754056 (-)
XLOC_008928 NA non-coding downstream 303137 2323666 ~ 2328284 (-)
XLOC_008927 AL954387.2 non-coding downstream 365338 2265969 ~ 2266083 (-)
XLOC_008910 LO017713.1 non-coding downstream 1309515 1321790 ~ 1321906 (-)
XLOC_008940 CABZ01086049.1 non-coding upstream 103492 2736383 ~ 2736498 (-)
XLOC_008942 NA non-coding upstream 180625 2813516 ~ 2816142 (-)
XLOC_008946 CABZ01086029.1 non-coding upstream 285366 2918257 ~ 2931021 (-)
XLOC_008951 NA non-coding upstream 482446 3115337 ~ 3116262 (-)
XLOC_008952 NA non-coding upstream 527547 3160438 ~ 3162459 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000091_00382012_00384325 CLDNJ coding CI01000091 null 381775 ~ 384589 (+)