XLOC_008939 (ppp5c)


Basic Information

Item Value
gene id XLOC_008939
gene name ppp5c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2727670 ~ 2754056 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017653
AGACTGTTCTAGACGTACCTTCCCGTAAGTGTTTGCGACAGCTCTTCGCGCGCACGCGGCAGCATGACGGAACACGGCAGCGAGAAGATGGCGGAAGAAGAGCGGAATGCCAGTGCAGAGAAACTCAAGGAGAAGGCTAATGACTACTTTAAAGATAAAGACTATGAGAACGCCATCAAGTATTACACAGAAGCACTGGATCTCAACCCAACCAATCCCATATACTACAGTAACCGGAGTCTGTCGTATCTGCGCACCGAGTGCTATGGCTATGCGCTGGCCGATGCCACCCGAGCCCTGGAGCTGGACAAGAACTACCTTAAGGGCTACTATCGGCGAGCCACCTCCAACATGGCCCTGGGGAAGTTTAAAGCAGCACTCAAAGATTATGAAACGGTGGTTAGAGTTCGGCCCAATGACAAAGATGCCAAGATGAAGTACCAGGAATGTAATAAGATTGTCAAGCAGAAGGCCTTTGAACGGGCCATCGCCAGCGACGAGCTCAAACGATCAGTAGTCGACTCCTTAGACATCGAGAACATGACAATTGAGGACGACTATGCGGGACCTAAACTTGAAGATGGGAAGGTTACGCTGAAGTTCATGGAAGACTTGATGGATTGGTTCAAAGACCAAAAGAAACTGCACAGAAAGTGTGCTTACCAGatACTGGTTCAAGTTAAAGAAGTTTTAACCAAACTTCCTAGTCTTGTTGAGATTACATTAAAAGAGTCAGAGAAAATCACTATTTGTGGCGATACACATGGCCAGTACTATGATCTTCTAAATATTTTTGAGCTGAACAGCTTACCATCTCCAACTAATCCCTATCTGTTCAACGGAGACTTTGTGGACCGCGGATCTTTTTCTGTCGAGGTCATTCTTACGCTTTTTGGCTTCAAGCTGCTCTATCCAGAACACTTCCACCTGCTAAGAGGTAACCATGAAACTGATAACATGAACCAGATGTATGGCTTCGAGGGTGAGGTAAAAGCGAAGTACTCCTCCCAGATGTTCAAGCTGTTCAGTGAAGTCTTCCAGTGGCTTCCTCTTGCGCAGTGCATCAATGACAAAGTACTGGTGATGCACGGTGGACTGTTTAGTGAGGACGGTGTGACCTTAGATGACATTAGAAAGATAGACAGGAACAGGCAGCCGCCAGATTCTGGTCCGATGTGTGATCTCCTGTGGTCAGATCCTCAGCTGCAGAACGGACGCTCCATCAGTAAGCGCGGCGTGAGCTGTCAGTTCGGGCCCGACGTTACAGAGCGATTCTTGGAGCAGAACAAACTGGAGTACATCGTGCGCAGCCATGAGGTCAAAGCCGAAGGCTACGAGGTCACTCACTCAGGGAAGTGCATAACCGTGTTTTCAGCGCCAAATTACTGTGACCAGATGGGGAATAAAGGAGCGTACATTCATCTCAGGGGATCAGACCTCAAGCCAGAGTTTCACCAGTTTACTGCTGTGCCTCATCCAAATGTCAAACCGATGGCATACGCCAACTCCCTGATGCAGATGGGTATGATGTAGAGGTTTTCTCACACAGAAGCTGCTGTGGTCTGAAGTCCACGCCAATCCCTCCAAATCCATCCTCACTTTCTTCTTATCGCcgtttcaaacaaaaaaaaaggtttcttcCTTGCGCACAAACATTTAAACAGTTCCTATATCATCATCCTTATTAGTGCATCGTTTGAGTAGTAAACTTATGATGCCTTTGCAAAAAATGTCTCGTTTCTactccaaatatcttaaaattcctaaatcaaggaGCATTTTCTAGACTAATAAACAATATAGGCATGCTTTCAGAGATAATACATCAAAAGTAAGTGTTTTATCCTTAAAACAGGCTAAATCTGCCAATGTGTAACTTAAAtgatcttgtttttgctttgaaataagaaTATTGTGCTTGCTTTAAGGAGCAAATGTGTGCATACTATTTCTGAAAACGAGACCATATgtattgcttgtctagaaaatgcttctcagtgtaagagtttttagatatttggactagaaacgagacacaAACTCTAATTTGAAGAAGAAATGGGAATGTTATTTGTGCATTAAAccgatagttcatccaaaaatgaacagTTCCTGTTATTTTACTCGCCCACAGATCATCTTAGATGACTGTTTTGTCTTCAGGAGAACTTTAAAGGAGGTTTTGAGCTGAATGTGACGGTGATtgatataatggcagtgaatggtgaccggtttattacattaaaaatgaaCATATAAATGAGTACAAATCAATAGTCGTGGCTCCTCATGAGGTCTAATAAAGCCGAACGATCGCTCAGTGTGAGAAACTAAACattgtttacaatattattagctttaatccacatCCTGGTCAAACAGTTCTCGGCGCATGTGTGAATGCAGTCCGATTGTATTCCTGAGAATTCATCataatactgtataataatgtttaatttcttaTACTGGGTGATCGTTTGGCCTCACAAGACCTCATTGTGTCTTCATGAGCCACGGTTATTGATTTGTACCcatttatgtgtgtttatttttaatctacactgcaaaaaatgcttttcttacttagattttttgttttgtttctagtccaaatatttaaaaattcttatatcaagaaacattttctaggcaagcaaaatatattgtcttgttttcagcaataatatCCCAATATTAAGGcagtttttccttgaaacaagcaaaataatctgccaatgggataagcaaatgaatcttgtttttccttttgacataagatttgTTTGCTttcctcattggcagattatttagcttgttttaaggaaaaactcacctaattttggcatattatatcttaaaacaaggcAGTATGTTTTGCATGTCTAAAAAATTcgtcttgatttaagagtttttagatatttggactagaaacaagacaaaaaatctaagtaagaaaagcattttttgcagtgtagtaaaCCGGTCACCATTCACCGCCATTATATCAGTCACCAAAGACCACGGATTCAGCTTAGAATCTTTAATGTTCAATGAAGAAAGTCACCTACATCTCGGATGAGCTTTGgaagttttgggtgagctatctcttaaatcaggggtgtccaaactctggtgtcctgcaaggatgtttctacactctcagaaataaaggtacacgagctgtcactggggtggtaccttttcaaaaggtacaaatctgtacctaaaatgtccatattaatacctcaagggtacatattagtacctaaaagggtactaatatatactttaggtactaatatatacttttgaggtaccaatatggaccctttaagtacaaatgtgcagTGACGGCTCGCGTACCTTTGTTTTTGAGAGTGTAGAaagcctggtaagagcttgattagctagcccaggtgtgtctgattagggttggaactatactttgcaggacaccggccctccaggactgagtttggacacccctgccttgaATAGATGTCATCCTTGGGTTGATACCCCCTCCTTGGTCATTAGGTGTTCATGTGAAGCTACACAGTTTGAATCGGatgataataaaactaaattgtaccaaagaacaacaaatatatatgtgtAGCGTCACAAAATAAGAGCGCTCATGTAGAATTACAGCTCCTGCGACCATGCGGATCAAAACCCTGATCAACACTTTACAAAATCTGTGTTTCTACATGAACCTTTCGTTTGCCCCGTGAATACATCGCAGGACCGTTTCCTTTACATTTAGTGAAGTGTTGGGAGGGAGAACGGTCATTAATACTGTAGTAGTATAGATATTAACGTGTCATCTGTTCACATGAGGAAAAGAAAAGCAACGTATAATAAAGAAACTCCACGCACAGCATCTGTCTTGCAGGCTAGGGTTTCTGTTTGTCCAACCTACATGATAAATGTCACAAAACAAATTGAGCTGCTGTGTAAAACTTCCACGGTTTTCCTTCACACACTCGCTCCCTTTTAAGAAGGATAGAACAGTGTGATATTATTAAGCTCGGTCTCTTGTCTCCACTATGTAGGCAGCTCCCACGGTTATTCGTTTTTCTCCCAACATGCTTAACTGAAGTGCACTGGAGATTCTCTATATCAGTGTTTCTcgaccatgttcctggaggaccaccacaTTCTCCTTGTCTCCTCAACCGAACacgcctgattcagatcatcagctcgttagcagagactgaaagacctgggTGTGACGAACACACACACGAACATGCAGTGCTGGCGATCCTTcgtggaacgtggttgagaaacactgctctatatccattttttttatttccgttTAGCAGATCtccctttttgtgtgtgtgtatgtgtgtggactTCCAGCAGAATCCTACCTTACTGTCTCTTTAAACGCACAGCAGTCATGACCCCACGCCCCTTGACTTTTTAGAGGATATCAGTATGTACACcaacatgtatgtatatatactttATCATTTGAAACTTCTGTGTACATGTTTGGAAAAGACAAgatattgaataataaaacaaatatgccaGTCTGATGATTAGCTTGTGcttgtgcagtttttgttgtgaatgatgtttgctgtttatgTTTGTTAAGCTGCGCTAGTAGTAAGACTGGGCGATTTGGCCTGAAATCAAAGAATCGAGAAATTAATTGaacattaattgattaattgaagattaatattatggggtattgtgtgtagaatgctGAGGAAATAGCTacatttattttggaataaggctgtaacatagaaaatgtggaaaaggttCAATGCAAAAcactgtttttgtcttgtttccagtc
>TCONS_00017654
GTGACCAGATGGGGAATAAAGGAGCGTACATTCATCTCAGGGGATCAGACCTCAAGCCAGAGTTTCACCAGTTTACTGCTGTGCCTCATCCAAATGTCAAACCGATGGCATACGCCAACTCCCTGATGCAGATGGGTATGATGTAGAGGTTTTCTCACACAGAAGCTGCTGTGGTCTGAAgacaccggccctccaggactgagtttggacacccctgccttgaATAGATGTCATCCTTGGGTTGATACCCCCTCCTTGGTCATTAGGTGTTCATGTGAAGCTACACAGTTTGAATCGGatgataataaaactaaattgtaccaaagaacaacaaatatatatgtgtAGCGTCACAAAATAAGAGCGCTCATGTAGAATTACAGCTCCTGCGACCATGCGGATCAAAACCCTGATCAACACTTTACAAAATCTGTGTTTCTACATGAACCTTTCGTTTGCCCCGTGAATACATCGCAGGACCGTTTCCTTTACATTTAGTGAAGTGTTGGGAGGGAGAACGGTCATTAATACTGTAGTAGTATAGATATTAACGTGTCATCTGTTCACATGAGGAAAAGAAAAGCAACGTATAATAAAGAAACTCCACGCACAGCATCTGTCTTGCAGGCTAGGGTTTCTGTTTGTCCAACCTACATGATAAATGTCACAAAACAAATTGAGCTGCTGTGTAAAACTTCCACGGTTTTCCTTCACACACTCGCTCCCTTTTAAGAAGGATAGAACAGTGTGATATTATTAAGCTCGGTCTCTTGTCTCCACTATGTAGGCAGCTCCCACGGTTATTCGTTTTTCTCCCAACATGCTTAACTGAAGTGCACTGGAGATTCTCTATATCAGTGTTTCTcgaccatgttcctggaggaccaccacaTTCTCCTTGTCTCCTCAACCGAACacgcctgattcagatcatcagctcgttagcagagactgaaagacctgggTGTGACGAACACACACACGAACATGCAGTGCTGGCGATCCTTcgtggaacgtggttgagaaacactgctctatatccattttttttatttccgttTAGCAGATCtccctttttgtgtgtgtgtatgtgtgtggactTCCAGCAGAATCCTACCTTACTGTCTCTTTAAACGCACAGCAGTCATGACCCCACGCCCCTTGACTTTTTAGAGGATATCAGTATGTACACcaacatgtatgtatatatactttATCATTTGAAACTTCTGTGTACATGTTTGGAAAAGACAAgatattgaataataaaacaaatatgccaGTCTGAT

Function

symbol description
ppp5c Predicted to enable protein serine/threonine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytosol and nucleus. Orthologous to human PPP5C (protein phosphatase 5 catalytic subunit).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-050327-75 Predicted to enable protein serine/threonine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytosol and nucleus. Orthologous to human PPP5C (protein phosphatase 5 catalytic subunit).

Ensembl:

ensembl_id ENSDARG00000034313

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017653 False 4831 mRNA 0.41 13 2727670 2754056
TCONS_00017654 True 1289 mRNA 0.43 3 2727941 2734560

Neighbor

gene id symbol gene type direction distance location
XLOC_008938 si:ch211-235m3.5 coding downstream 1008 2700646 ~ 2726662 (-)
XLOC_008937 cldna coding downstream 70162 2655566 ~ 2657508 (-)
XLOC_008936 cldnf coding downstream 75030 2650787 ~ 2652640 (-)
XLOC_008935 cldne coding downstream 86704 2638884 ~ 2640966 (-)
XLOC_008934 cldnj coding downstream 94779 2631421 ~ 2632891 (-)
XLOC_008941 tgfb1a coding upstream 22450 2776506 ~ 2803313 (-)
XLOC_008942 NA coding upstream 59460 2813516 ~ 2816142 (-)
XLOC_008943 CABZ01086041.1 coding upstream 66712 2820768 ~ 2841677 (-)
XLOC_008944 ankrd49 coding upstream 96909 2850965 ~ 2857961 (-)
XLOC_008945 guca1c coding upstream 130655 2884711 ~ 2903475 (-)
XLOC_008933 NA non-coding downstream 101742 2618279 ~ 2625928 (-)
XLOC_008932 NA non-coding downstream 116500 2598804 ~ 2611170 (-)
XLOC_008928 NA non-coding downstream 399386 2323666 ~ 2328284 (-)
XLOC_008927 AL954387.2 non-coding downstream 461587 2265969 ~ 2266083 (-)
XLOC_008910 LO017713.1 non-coding downstream 1405764 1321790 ~ 1321906 (-)
XLOC_008946 CABZ01086029.1 non-coding upstream 164201 2918257 ~ 2931021 (-)
XLOC_008951 NA non-coding upstream 361281 3115337 ~ 3116262 (-)
XLOC_008952 NA non-coding upstream 406382 3160438 ~ 3162459 (-)
XLOC_008957 NA non-coding upstream 1000510 3754566 ~ 3760957 (-)

Expression


Co-expression Network