XLOC_008942


Basic Information

Item Value
gene id XLOC_008942
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2813516 ~ 2816142 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019114
CTTCATTTGAATCTGGCCAACAGATACTATGCGTACTGTAAGAGAACAAACgaaaagtttagatgcaaaaacctctaaaggcCATTTGATATTTTGCTCTAAAATTAGAATTTTTCTCCAACTCTTGTGGATAGGCTCAATAATGTTACATTTATAGTGAAGGAAAGGTTCTGTTCATTGCCTTTcaagtaaaataactgaacatgAACAGCAGGTTGAGATAAATTGTcattttagatggcatttagagattttttggcatctgaactcttcatatattccCCAAATTTCATCCAAAATGTTCGAAATAAACACATCACctgcaattttttttatacatttaaacataTCGTAGGTCATTAAAGCAATTTATgtaatacatttaaacataTCGTAGGTCATTAAAGCAATTTATGTAATACATTTGACTTTTTCAGgacttctttttttcttatttattataacTACTGCTGAACATTTCCCTTAGAATGAGcgtattcaattaaattaaattgagttgagtttttttgtaattgttataAATAGCTACTAAGTAACATCAGAGCAGCTATAATGTTAAAGTGCAATAGCTAAGAACGTTTCAATAGCCGCAATCTTCTTTTTGACTAATAAACAGATTCGATTTTTGTTTTTCGACTCAGCGCTACCTCAcgccaatttgtaactttttgatttagtgacaatttttttgtggctgcaaatttaaatttttcaaaacaaatcaGCACTCCTTTTTTCTTATTATATCTATTGCTGAACATTTCCCTTAGAATGagcttattaaattaaattgagttTATCATAATTGTTATCAATAGCTAAAAATGTTTCGATGGTCACAATCTTCTTTTTAACTCATAAACagatatgtttgttttgtttgtttttcaaccCAACGCGTAATCAaactcttactttttttttttttatttagtggctattCGCATTAATTCGTAAGCTCTCATTCACAAATTTTACTACAATTTTctcattccccaatgacggttaggttaAGAGGTGGGGTTTTGGTTTtggccatgcctccttttaataATCGTAcattttttgtatgactgaactcgagGAATTTGTACAAATTACTCACTAAACTCACAAAATGTACAATAGTTACGtatcctcatgagatcaggctgatccAACACATAACGTCAATGGATAGTGCTTGGTAAGTGGCACAATACGTTGTTTGCCATTCTTTTACTGCTGTTTGTATAAATAGTGCTATAATACACGGCTGAGTTTTTAACGCCAACTAATTTTATGCCACACTGTTGTAacgtaattttattttaaaatctgcaATGTGTTAAATCCgacttaaaaatgtaattaagatCTTGATACAGCAATCACTAGGCCCACGATGCTAATATAAACTTGGGAAGCCTATTTAGAAAGTGGTACACAAGGTATTGTGTAAATTTGCAATGAAAATCTGACAATTTGTGGCTTATTGGTAAAtgttgatttattaattattgattttttttttactccactaTATTTTGTATCAAGATCATGGACAATgctgtgcttttatttatttatttatgatttttggaCTGTATATGTTTCTGTGTTTACAGAAATGCAAGATGATTGTGTAACAAATTACACTATGagaaatgtttaaatgtatagCTGTATGTCTCAAATTGTTTACATGCAGTGAATACTTGTTTTGTAACATATTGGTTTGGTTATATGATTTAACATGTAGTATACAACTTTTTTATCCGATGTAGTGATctcttgttttgtgttgtatttttttctaatacTGAGAGAATCTTTGCTTGTTTTTGCATAAAATCttgcataaaatgaaaatatcTGAATGTCTCAGCTTCTTTTCTGCAAACATTTAgagaaaatgttaaaaaagttttttgtttttgtttttttgaacatAGCTTAAATGGTACAAACTTATATTTCCGCctctttttacccagacatttaaatgtGCTgatgtatgtaagtttttgactcttcaaaagcataaaaataccataatttgTTTGCAGGagttatttaagaaacatgctaagtagtGCAGGTGGTGTACGGTCTGgctcaaaatggctgccgtcgtgtcatccaggtggataaatctgtggaaaaaaatgtgtaaagagaTCTGATTAccaagaaaagcgctatataaatgtaaagaacttattattaatgttgttatgacttgaaaatgaaagttctgtGTCGAAATCGGACGTGCTTATTAATAAAGCTGCTG

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0048731 system development biological_process
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0030154 cell differentiation biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1903706 regulation of hemopoiesis biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0002376 immune system process biological_process
GO:0010467 gene expression biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0017134 fibroblast growth factor binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0005007 fibroblast growth factor-activated receptor activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0019199 transmembrane receptor protein kinase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019114 True 2296 lncRNA 0.31 2 2813516 2816142

Neighbor

gene id symbol gene type direction distance location
XLOC_008941 tgfb1a coding downstream 10203 2776506 ~ 2803313 (-)
XLOC_008939 ppp5c coding downstream 59460 2727670 ~ 2754056 (-)
XLOC_008940 CABZ01086049.1 coding downstream 77018 2736383 ~ 2736498 (-)
XLOC_008938 si:ch211-235m3.5 coding downstream 86854 2700646 ~ 2726662 (-)
XLOC_008937 cldna coding downstream 156008 2655566 ~ 2657508 (-)
XLOC_008943 CABZ01086041.1 coding upstream 4626 2820768 ~ 2841677 (-)
XLOC_008944 ankrd49 coding upstream 34823 2850965 ~ 2857961 (-)
XLOC_008945 guca1c coding upstream 68569 2884711 ~ 2903475 (-)
XLOC_008946 CABZ01086029.1 coding upstream 102115 2918257 ~ 2931021 (-)
XLOC_008947 zgc:153184 coding upstream 115740 2931882 ~ 2973368 (-)
XLOC_008933 NA non-coding downstream 187588 2618279 ~ 2625928 (-)
XLOC_008932 NA non-coding downstream 202346 2598804 ~ 2611170 (-)
XLOC_008928 NA non-coding downstream 485232 2323666 ~ 2328284 (-)
XLOC_008927 AL954387.2 non-coding downstream 547433 2265969 ~ 2266083 (-)
XLOC_008951 NA non-coding upstream 299195 3115337 ~ 3116262 (-)
XLOC_008952 NA non-coding upstream 344296 3160438 ~ 3162459 (-)
XLOC_008957 NA non-coding upstream 938424 3754566 ~ 3760957 (-)
XLOC_008970 NA non-coding upstream 1347436 4163578 ~ 4174873 (-)

Expression


Co-expression Network